Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 BCDIN3D-201ENST00000333924 3253 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
VPS9D1Q9Y2B5 MTHFD1L-212ENST00000618312 3159 ntTSL 5 BASIC8.67□□□□□ -1.02
VPS9D1Q9Y2B5 LRRC49-203ENST00000443425 3085 ntTSL 2 BASIC8.67□□□□□ -1.02
VPS9D1Q9Y2B5 SNCA-201ENST00000336904 3041 ntAPPRIS P1 TSL 2 BASIC8.67□□□□□ -1.02
VPS9D1Q9Y2B5 TBC1D31-202ENST00000327098 2985 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
VPS9D1Q9Y2B5 NF1P1-201ENST00000604105 2645 ntBASIC8.67□□□□□ -1.02
VPS9D1Q9Y2B5 AC092279.2-201ENST00000623742 2189 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC098864.1-202ENST00000507869 2129 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 ELF4-202ENST00000335997 4145 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AMBRA1-206ENST00000528950 4102 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 LINC00837-201ENST00000443246 3991 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 LIMK2-201ENST00000331728 3670 ntAPPRIS P4 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC118282.4-201ENST00000623090 1712 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 NFIA-212ENST00000485903 1674 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 DBIL5P2-202ENST00000491724 1692 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 BBS12-201ENST00000314218 3244 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 SNCA-206ENST00000420646 3127 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 RASA2-201ENST00000286364 5614 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 GPN1-202ENST00000407583 1395 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AL161725.1-201ENST00000591577 1351 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 CEACAM21-201ENST00000187608 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC109780.1-201ENST00000451768 1344 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 RN7SKP173-201ENST00000362821 315 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 RNU6-1322P-201ENST00000364309 107 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 Y_RNA.395-201ENST00000383945 109 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AAMDC-202ENST00000393427 531 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 MED28P1-201ENST00000399158 571 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC025750.1-201ENST00000399891 379 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AL589994.1-201ENST00000404962 340 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 MIR548M-201ENST00000408260 86 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC004690.1-201ENST00000418216 328 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 CDKN2AIPNLP3-201ENST00000418361 309 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC008758.2-201ENST00000420038 695 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 EIF4A1P2-201ENST00000422633 1220 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 EIF4A1P10-201ENST00000428832 1216 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 HMGN1P36-201ENST00000446623 298 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AL355472.1-201ENST00000451795 575 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 FTLP18-201ENST00000453860 523 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC092610.1-201ENST00000454916 373 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC009108.1-201ENST00000473913 796 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC004917.1-202ENST00000475791 760 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 RPL7AP8-201ENST00000481963 804 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 RN7SL800P-201ENST00000484823 280 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 FTH1P9-201ENST00000513251 355 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 OR10J2P-201ENST00000514684 961 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC024451.3-201ENST00000517810 463 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC100849.1-203ENST00000518417 723 ntTSL 4 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 H2AFZP4-201ENST00000534148 377 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC087241.2-201ENST00000535801 324 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC137767.1-202ENST00000543072 752 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 NBPF5P-202ENST00000545941 1032 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 C12orf73-203ENST00000546540 590 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC063950.1-201ENST00000552036 308 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC004828.1-201ENST00000555303 654 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 MIR5697-201ENST00000578045 78 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC009977.1-201ENST00000586015 570 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AL121830.1-203ENST00000598694 701 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC011465.1-201ENST00000599092 328 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC011497.2-201ENST00000600255 639 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 C1orf186-208ENST00000603378 614 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC112191.3-201ENST00000604371 277 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC241377.2-202ENST00000636462 997 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC241585.4-201ENST00000640951 686 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC007342.7-201ENST00000624610 2337 ntBASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 TTC6-203ENST00000476979 2253 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 RNF138-201ENST00000257190 2071 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 ZNF714-210ENST00000620627 2066 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AL137145.2-201ENST00000399868 3086 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 KLF5-205ENST00000539231 2951 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 TMEM144-216ENST00000514558 3699 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 AC124319.2-201ENST00000575034 3651 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS9D1Q9Y2B5 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 EFTUD1P2-201ENST00000514817 1603 ntBASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 WIPF3-203ENST00000409290 4002 ntAPPRIS P2 TSL 5 BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 CABYR-202ENST00000399481 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 CDH13-202ENST00000428848 2195 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 GALNT15-206ENST00000617544 2775 ntTSL 5 BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 PLSCR4-210ENST00000493382 1375 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
VPS9D1Q9Y2B5 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms