Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 MELK-207ENST00000536860 2342 ntTSL 2 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 MIR541-201ENST00000401360 84 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 AL096711.1-201ENST00000404780 554 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 RPS3AP2-201ENST00000407190 754 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 NDUFS5P5-201ENST00000437256 321 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 PCBP2P1-201ENST00000437262 977 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 AP006222.1-205ENST00000450734 457 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 AC092593.2-201ENST00000513866 913 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 MIR6809-201ENST00000612189 116 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 RFPL4AP6-201ENST00000616792 846 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 MAPK10-344ENST00000641718 3746 ntBASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC11.94□□□□□ -0.5
SHROOM4Q9ULL8 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 CASC19-205ENST00000641013 1411 ntBASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 DPPA2P3-201ENST00000411853 655 ntBASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AL513325.1-201ENST00000417716 1034 ntBASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 RPS23P1-201ENST00000491662 432 ntBASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 IMMP1LP3-201ENST00000604197 224 ntBASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AL513218.1-201ENST00000606527 391 ntBASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AL008723.3-201ENST00000608926 449 ntBASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AP000864.1-201ENST00000609424 650 ntBASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SHROOM4Q9ULL8 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 AL353662.1-201ENST00000439099 327 ntBASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 AL512637.1-201ENST00000439523 1231 ntBASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 RPL34P33-201ENST00000486062 334 ntBASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 AC108043.1-201ENST00000512696 574 ntBASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 OR7A11P-201ENST00000597719 953 ntBASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SHROOM4Q9ULL8 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 AC011379.1-201ENST00000508713 3025 ntBASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 SNORA21-201ENST00000362423 132 ntBASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 RN7SKP162-201ENST00000363605 345 ntBASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 AC015818.6-201ENST00000584274 634 ntBASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 CCT5-215ENST00000625723 135 ntTSL 5 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 AC116667.2-201ENST00000641075 823 ntBASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 IL22RA2-201ENST00000296980 2886 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SHROOM4Q9ULL8 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms