Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TNPO1P2-201ENST00000426249 2665 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AP004289.1-201ENST00000436307 2205 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC022034.1-201ENST00000512867 2156 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC123769.1-201ENST00000530992 3192 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC010401.2-201ENST00000575137 4934 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 RNA5SP198-201ENST00000410376 127 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 DHFRP2-201ENST00000414224 547 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AL590399.4-201ENST00000436561 601 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 SNX18P26-201ENST00000458433 740 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 GM2AP2-201ENST00000491764 562 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 GUSBP9-201ENST00000510138 584 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 IGHV1-14-201ENST00000523391 241 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 AP003033.2-201ENST00000528901 805 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC009729.1-201ENST00000548873 1133 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 AL589863.1-201ENST00000595383 631 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 WBP1LP12-201ENST00000604449 331 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 MIR6811-201ENST00000620409 58 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 AC010325.3-201ENST00000641084 394 ntBASIC6.34□□□□□ -1.39
VPS35Q96QK1 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.34□□□□□ -1.39
VPS35Q96QK1 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
VPS35Q96QK1 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.4
VPS35Q96QK1 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
VPS35Q96QK1 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 STAG3L4-201ENST00000352103 530 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 RN7SKP250-201ENST00000363924 321 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 RNA5SP77-201ENST00000365394 120 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC003045.1-201ENST00000398779 713 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 PSMA6P1-201ENST00000400275 741 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 U3.43-201ENST00000410734 213 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC097721.1-201ENST00000427150 1253 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC096632.2-201ENST00000438139 1239 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 H3F3BP1-201ENST00000440551 403 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 CT45A11P-201ENST00000448043 1134 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 RPL29P23-201ENST00000486188 442 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 NPM1P27-201ENST00000502784 830 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 OR51A1P-201ENST00000511110 946 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AL121579.2-201ENST00000555466 590 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 BMS1P16-201ENST00000556075 1147 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC233702.7-202ENST00000582941 211 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 RN7SL475P-201ENST00000583379 298 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AL122023.1-201ENST00000622847 530 ntBASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms