Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 AL132640.2-201ENST00000559968 1698 ntBASIC7.58□□□□□ -1.2
LIG3P49916 SF3A3P1-201ENST00000446317 1477 ntBASIC7.58□□□□□ -1.2
LIG3P49916 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC7.58□□□□□ -1.2
LIG3P49916 RN7SKP149-201ENST00000363008 344 ntBASIC7.58□□□□□ -1.2
LIG3P49916 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC7.58□□□□□ -1.2
LIG3P49916 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 PTMAP8-201ENST00000397729 342 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AL391422.1-201ENST00000402155 436 ntBASIC7.58□□□□□ -1.2
LIG3P49916 RPL10P10-201ENST00000403509 664 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AL138880.1-201ENST00000405824 642 ntBASIC7.58□□□□□ -1.2
LIG3P49916 RNU6-648P-201ENST00000410190 107 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AC093642.1-201ENST00000412193 565 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG3P49916 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC7.58□□□□□ -1.2
LIG3P49916 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 RNF11P2-201ENST00000427702 440 ntBASIC7.58□□□□□ -1.2
LIG3P49916 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 AC005345.1-201ENST00000431868 217 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AC245047.1-201ENST00000433276 873 ntBASIC7.58□□□□□ -1.2
LIG3P49916 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC7.58□□□□□ -1.2
LIG3P49916 EXTL2P1-201ENST00000446218 416 ntBASIC7.58□□□□□ -1.2
LIG3P49916 PTENP1-201ENST00000447117 1215 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 CDC42P2-201ENST00000448566 569 ntBASIC7.58□□□□□ -1.2
LIG3P49916 OR7E62P-201ENST00000456741 477 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AC091951.3-201ENST00000504093 246 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 AC055733.3-201ENST00000505214 523 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AC108120.1-201ENST00000506543 991 ntBASIC7.58□□□□□ -1.2
LIG3P49916 SCARNA20.1-201ENST00000516009 138 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG3P49916 SNX18P27-201ENST00000523611 779 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC7.58□□□□□ -1.2
LIG3P49916 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
LIG3P49916 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG3P49916 RBM22P1-201ENST00000578589 1214 ntBASIC7.58□□□□□ -1.2
LIG3P49916 WDR45BP1-201ENST00000583470 1029 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG3P49916 AL451085.1-201ENST00000604546 690 ntBASIC7.58□□□□□ -1.2
LIG3P49916 RPS28P1-201ENST00000604589 187 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AL592494.3-201ENST00000609485 464 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AL359513.1-201ENST00000614364 557 ntBASIC7.58□□□□□ -1.2
LIG3P49916 MIAT_exon1.1-201ENST00000617016 135 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AC018558.4-201ENST00000622153 281 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AP000676.3-201ENST00000623299 569 ntBASIC7.58□□□□□ -1.2
LIG3P49916 TTN-AS1-265ENST00000627661 806 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 AL357140.4-201ENST00000636827 412 ntBASIC7.58□□□□□ -1.2
LIG3P49916 AC139713.2-210ENST00000641741 992 ntBASIC7.58□□□□□ -1.2
LIG3P49916 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
LIG3P49916 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 FOLH1B-202ENST00000529567 2145 ntBASIC7.58□□□□□ -1.2
LIG3P49916 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG3P49916 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 AC005261.4-201ENST00000600047 1385 ntBASIC7.58□□□□□ -1.2
LIG3P49916 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG3P49916 VEZF1P1-201ENST00000423931 1541 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AC053481.2-202ENST00000582394 1500 ntBASIC7.57□□□□□ -1.2
LIG3P49916 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
LIG3P49916 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG3P49916 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 TUBBP10-201ENST00000427668 1301 ntBASIC7.57□□□□□ -1.2
LIG3P49916 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 AC079298.1-201ENST00000625026 1619 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG3P49916 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG3P49916 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
LIG3P49916 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
LIG3P49916 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG3P49916 SNORD15A-201ENST00000384214 148 ntBASIC7.57□□□□□ -1.2
LIG3P49916 RPSAP44-201ENST00000406712 884 ntBASIC7.57□□□□□ -1.2
LIG3P49916 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.57□□□□□ -1.2
LIG3P49916 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG3P49916 XKRYP4-201ENST00000414395 483 ntBASIC7.57□□□□□ -1.2
LIG3P49916 QRSL1P2-201ENST00000418582 964 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AC008758.2-201ENST00000420038 695 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG3P49916 TAS2R2P-201ENST00000421146 910 ntBASIC7.57□□□□□ -1.2
LIG3P49916 GAPDHP73-201ENST00000423411 1007 ntBASIC7.57□□□□□ -1.2
LIG3P49916 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 AC019185.3-201ENST00000438805 323 ntBASIC7.57□□□□□ -1.2
LIG3P49916 DNAJA1P5-201ENST00000440278 943 ntBASIC7.57□□□□□ -1.2
LIG3P49916 TULP3P1-201ENST00000442322 816 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG3P49916 XKRYP5-201ENST00000449659 483 ntBASIC7.57□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms