Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 CDY19P-201ENST00000411668 1613 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 CDY18P-201ENST00000438294 1609 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL355312.2-201ENST00000455607 1541 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL158152.1-201ENST00000602652 1435 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 MTRF1-203ENST00000379480 2185 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 MYL12A-201ENST00000217652 1229 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 OR9K1P-201ENST00000326513 941 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 KRTAP13-4-201ENST00000334068 797 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC104699.1-201ENST00000352271 414 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SKP185-201ENST00000362813 326 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 COX7A2-201ENST00000370081 914 ntAPPRIS P2 TSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 LRRIQ3-202ENST00000370909 793 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 HSPB11-203ENST00000371377 760 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RPL12P1-201ENST00000374520 498 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 CREM-213ENST00000374734 711 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 PAGE5-203ENST00000374955 540 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 IGKV1D-12-201ENST00000377032 371 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 MIR152-201ENST00000385212 87 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RNU11-6P-201ENST00000391127 133 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL078599.1-201ENST00000402075 293 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SKP152-201ENST00000410444 315 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RNU2-22P-201ENST00000411266 212 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 MED15P8-201ENST00000411601 545 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL008626.1-201ENST00000412357 775 ntTSL 2 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC023669.1-201ENST00000414915 524 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL358176.3-201ENST00000420757 454 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RPL6P2-201ENST00000425480 783 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 METTL8P1-201ENST00000428182 611 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 MIR4435-2HG-211ENST00000443467 826 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RPL21P33-201ENST00000444831 484 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL135924.1-201ENST00000446146 423 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 EPN2-AS1-201ENST00000451099 1190 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC006159.1-201ENST00000452009 386 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 BX323845.2-201ENST00000458382 234 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AP000805.1-201ENST00000471604 784 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 NIP7P2-201ENST00000485801 544 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC022206.1-201ENST00000495947 347 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 TMEM267-204ENST00000510130 721 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 PPIAP11-201ENST00000510729 493 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RPS27AP18-201ENST00000515536 459 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RNU4ATAC18P-201ENST00000516179 126 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 SCARNA20.3-201ENST00000516913 131 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 IGKV1D-22-201ENST00000518953 324 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 HNF1A-AS1-202ENST00000535301 536 ntTSL 4 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC244131.1-201ENST00000542152 922 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC01169-201ENST00000558797 833 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC012291.1-201ENST00000559666 429 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SL804P-201ENST00000582466 298 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 LAMTOR5-AS1-205ENST00000587691 441 ntTSL 3 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC008622.1-201ENST00000597106 284 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC093063.1-201ENST00000599317 363 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 RPL12P41-201ENST00000599500 498 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL157899.1-201ENST00000604110 936 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AL451054.3-201ENST00000611115 776 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC099654.4-201ENST00000614168 1059 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 HOTTIP_2.1-201ENST00000616633 376 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC239600.2-201ENST00000619615 1165 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC103691.1-201ENST00000619654 520 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AP001264.1-201ENST00000620602 703 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 ITFG2-AS1-202ENST00000636122 962 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 GNPDA2-201ENST00000295448 1930 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 DDX50P1-201ENST00000438163 2400 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 CDY11P-201ENST00000447168 1651 ntBASIC3.3□□□□□ -1.88
CHKB-CPT1BH3BT56 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
CHKB-CPT1BH3BT56 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHKB-CPT1BH3BT56 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC3.29□□□□□ -1.88
CHKB-CPT1BH3BT56 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms