Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PTCD2P2-201ENST00000415579 1095 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AL355994.1-201ENST00000424379 260 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 LINC00328-2P-201ENST00000436585 219 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 RPL12P49-201ENST00000441100 121 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AC245291.3-201ENST00000443400 292 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 MTND6P8-201ENST00000503471 522 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AC113191.1-201ENST00000517759 403 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 RN7SL66P-201ENST00000582099 264 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 RN7SL261P-201ENST00000613441 282 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 U1.25-201ENST00000614085 162 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 U1.34-201ENST00000618578 162 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 U1.31-201ENST00000620022 160 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 MIR6811-201ENST00000620409 58 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SIX2Q9NPC8 AC024651.2-201ENST00000562480 2098 ntBASIC6.64□□□□□ -1.35
SIX2Q9NPC8 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 RPS26P38-201ENST00000414476 348 ntBASIC6.63□□□□□ -1.35
SIX2Q9NPC8 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AKAP17BP-201ENST00000431706 2719 ntBASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AL590004.3-202ENST00000445883 451 ntBASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 NATP-201ENST00000523491 878 ntBASIC6.63□□□□□ -1.35
SIX2Q9NPC8 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 WBP1LP12-201ENST00000604449 331 ntBASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AC011891.2-201ENST00000604949 397 ntBASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AC141002.1-201ENST00000607025 279 ntBASIC6.63□□□□□ -1.35
SIX2Q9NPC8 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SIX2Q9NPC8 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.62□□□□□ -1.35
SIX2Q9NPC8 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 RNA5SP110-201ENST00000362638 115 ntBASIC6.62□□□□□ -1.35
SIX2Q9NPC8 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 AL731534.1-201ENST00000434711 269 ntBASIC6.62□□□□□ -1.35
SIX2Q9NPC8 AC013403.1-201ENST00000436954 263 ntBASIC6.62□□□□□ -1.35
SIX2Q9NPC8 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.62□□□□□ -1.35
SIX2Q9NPC8 RPS7P10-201ENST00000464254 603 ntBASIC6.62□□□□□ -1.35
SIX2Q9NPC8 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms