Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CU633906.2-205ENST00000624847 1468 ntTSL 5 BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 AC116366.1-201ENST00000443093 3730 ntTSL 5 BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 AC138393.1-206ENST00000540997 1886 ntBASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 PSMC1P7-201ENST00000495689 1315 ntBASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 CUZD1-206ENST00000392790 2279 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC8.23□□□□□ -1.09
TRAIPQ9BWF2 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC000367.1-201ENST00000452711 1766 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 LINC01091-204ENST00000515769 2204 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC020904.2-202ENST00000614660 1401 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 MAPK10-272ENST00000641110 2724 ntAPPRIS P2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 ZNF10-201ENST00000248211 4441 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 ARMCX7P-201ENST00000372828 562 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 SNORA70G-201ENST00000383923 142 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AL117344.1-201ENST00000407196 616 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 ETFBKMT-203ENST00000412352 1083 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AL161742.1-201ENST00000418154 584 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 PPIL1P1-201ENST00000423936 499 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 FAM96AP1-201ENST00000430879 482 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 NQO1-204ENST00000439109 924 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 PRKAR1AP1-201ENST00000441422 1162 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 WDR82P2-201ENST00000444540 928 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 GTF2F2P2-201ENST00000445825 721 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AL929288.2-201ENST00000446368 407 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AURKAPS1-201ENST00000451805 1212 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC073648.3-201ENST00000504939 925 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC027315.1-201ENST00000511592 469 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 LINC01094-206ENST00000514130 594 ntTSL 4 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 TMEM97P2-201ENST00000517841 403 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AP000662.1-201ENST00000530952 487 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AP002812.4-201ENST00000532139 286 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC115676.1-201ENST00000538416 329 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AL354943.1-201ENST00000572103 781 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 RN7SL689P-201ENST00000577215 297 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC084782.3-201ENST00000612282 578 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 pRNA.9-201ENST00000618609 89 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC131159.1-201ENST00000621854 213 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 MIR1322-201ENST00000638013 71 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC008555.1-201ENST00000561778 2757 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 ZNF430-201ENST00000261560 3923 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC104446.1-201ENST00000613728 1321 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 EEF1A1P22-201ENST00000559385 1380 ntBASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC8.22□□□□□ -1.09
TRAIPQ9BWF2 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
TRAIPQ9BWF2 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC8.21□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms