Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 RN7SKP184-201ENST00000362348 333 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SSX3Q99909 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SSX3Q99909 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC5.57□□□□□ -1.52
SSX3Q99909 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 RN7SKP205-201ENST00000410999 307 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 AC000089.1-201ENST00000424559 801 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC5.57□□□□□ -1.52
SSX3Q99909 HBG2-204ENST00000444587 307 ntTSL 2 BASIC5.57□□□□□ -1.52
SSX3Q99909 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.57□□□□□ -1.52
SSX3Q99909 RN7SKP198-201ENST00000459286 306 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 AC063955.1-201ENST00000462872 685 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.57□□□□□ -1.52
SSX3Q99909 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 RPS14P8-201ENST00000478778 369 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 RN7SL612P-201ENST00000497704 295 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC5.57□□□□□ -1.52
SSX3Q99909 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 AC113398.2-201ENST00000507630 558 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC5.57□□□□□ -1.52
SSX3Q99909 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.57□□□□□ -1.52
SSX3Q99909 MTCYBP44-201ENST00000514835 823 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.57□□□□□ -1.52
SSX3Q99909 RNA5SP318-201ENST00000516352 92 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 AP001804.1-201ENST00000526868 919 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.57□□□□□ -1.52
SSX3Q99909 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC5.57□□□□□ -1.52
SSX3Q99909 PPIAP6-201ENST00000557078 499 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 Six3os1_1.1-201ENST00000620900 87 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.57□□□□□ -1.52
SSX3Q99909 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC5.57□□□□□ -1.52
SSX3Q99909 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
SSX3Q99909 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 AC097063.1-201ENST00000426714 1797 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 AC005005.4-201ENST00000623789 16698 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 AC005725.1-201ENST00000577346 2607 ntBASIC5.57□□□□□ -1.52
SSX3Q99909 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.57□□□□□ -1.52
SSX3Q99909 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SSX3Q99909 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.56□□□□□ -1.52
SSX3Q99909 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.56□□□□□ -1.52
SSX3Q99909 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SSX3Q99909 AC095038.1-201ENST00000429248 1591 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SSX3Q99909 AC092634.1-201ENST00000366505 199 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 AL672167.2-201ENST00000377164 879 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC5.56□□□□□ -1.52
SSX3Q99909 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC5.56□□□□□ -1.52
SSX3Q99909 PEX12P1-201ENST00000400284 1048 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AL035696.2-201ENST00000407941 709 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 RN7SKP91-201ENST00000410852 288 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 RAB9AP5-201ENST00000437794 597 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 HMGN1P32-201ENST00000441744 256 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 RAB9AP2-201ENST00000443911 597 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 GOT2P2-201ENST00000450663 1251 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AC022080.2-201ENST00000452932 533 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 NPM1P9-201ENST00000453156 844 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.56□□□□□ -1.52
SSX3Q99909 PSMA6P2-201ENST00000457574 686 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SSX3Q99909 RN7SL216P-201ENST00000471607 298 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC5.56□□□□□ -1.52
SSX3Q99909 RN7SL259P-201ENST00000478499 253 ntBASIC5.56□□□□□ -1.52
SSX3Q99909 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC5.56□□□□□ -1.52
SSX3Q99909 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SSX3Q99909 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 194 ms