Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.89□□□□□ -1.31
USP39Q53GS9 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 AC008171.1-201ENST00000395058 200 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 PSMA6P1-201ENST00000400275 741 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AL035405.1-201ENST00000400795 710 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 OR1F12-201ENST00000402365 945 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC6.89□□□□□ -1.31
USP39Q53GS9 MTCYBP7-201ENST00000419540 1134 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 CR848007.2-201ENST00000424918 787 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC6.89□□□□□ -1.31
USP39Q53GS9 AL354893.1-201ENST00000433735 348 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.89□□□□□ -1.31
USP39Q53GS9 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.89□□□□□ -1.31
USP39Q53GS9 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.89□□□□□ -1.31
USP39Q53GS9 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC6.89□□□□□ -1.31
USP39Q53GS9 AC099340.1-201ENST00000475247 599 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AC131233.1-201ENST00000479200 955 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 RN7SL413P-201ENST00000482700 297 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC6.89□□□□□ -1.31
USP39Q53GS9 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 SNX18P23-201ENST00000510867 677 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC6.89□□□□□ -1.31
USP39Q53GS9 MTCO1P47-201ENST00000523889 1271 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AC005519.1-201ENST00000554490 601 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 LINC00557-201ENST00000563184 1279 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC6.89□□□□□ -1.31
USP39Q53GS9 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC6.89□□□□□ -1.31
USP39Q53GS9 RPL29P33-201ENST00000587474 316 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC6.89□□□□□ -1.31
USP39Q53GS9 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AC138473.1-201ENST00000605717 526 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 AL138955.1-201ENST00000622881 1040 ntBASIC6.89□□□□□ -1.31
USP39Q53GS9 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.89□□□□□ -1.31
USP39Q53GS9 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC6.89□□□□□ -1.31
USP39Q53GS9 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
USP39Q53GS9 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.89□□□□□ -1.31
USP39Q53GS9 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC6.89□□□□□ -1.31
USP39Q53GS9 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC6.89□□□□□ -1.31
USP39Q53GS9 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC6.89□□□□□ -1.31
USP39Q53GS9 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
USP39Q53GS9 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
USP39Q53GS9 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
USP39Q53GS9 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
USP39Q53GS9 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC6.88□□□□□ -1.31
USP39Q53GS9 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
USP39Q53GS9 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC6.88□□□□□ -1.31
USP39Q53GS9 TPTE2P2-201ENST00000403471 1466 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 C1D-202ENST00000407324 1379 ntTSL 3 BASIC6.88□□□□□ -1.31
USP39Q53GS9 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 AC092725.2-201ENST00000567658 1389 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC6.88□□□□□ -1.31
USP39Q53GS9 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 RNA5SP140-201ENST00000364524 92 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 RNA5SP172-201ENST00000365061 118 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC006511.2-201ENST00000388966 660 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
USP39Q53GS9 RNA5SP115-201ENST00000411160 107 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 RPL17P17-201ENST00000419491 557 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 AC004854.1-201ENST00000440356 349 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 ELOCP13-201ENST00000443934 329 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 OR51P1P-201ENST00000447547 942 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC6.88□□□□□ -1.31
USP39Q53GS9 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.88□□□□□ -1.31
USP39Q53GS9 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC6.88□□□□□ -1.31
USP39Q53GS9 AC113367.2-201ENST00000505749 160 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 PRELID3BP5-201ENST00000508612 460 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.88□□□□□ -1.31
USP39Q53GS9 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 NATP-201ENST00000523491 878 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC124891.1-201ENST00000536322 519 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC6.88□□□□□ -1.31
USP39Q53GS9 NXPE2P1-201ENST00000543705 726 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.88□□□□□ -1.31
USP39Q53GS9 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.88□□□□□ -1.31
USP39Q53GS9 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.88□□□□□ -1.31
USP39Q53GS9 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC6.88□□□□□ -1.31
USP39Q53GS9 AC026826.3-201ENST00000561747 158 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC093510.2-201ENST00000562820 896 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC011921.2-201ENST00000589465 152 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 AL078623.1-201ENST00000602702 907 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC079315.1-201ENST00000602952 623 ntBASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms