Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AL035660.1-201ENST00000422041 222 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 NPM1P22-201ENST00000427761 952 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AL353662.1-201ENST00000439099 327 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 EEF1B2P6-201ENST00000445713 673 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 RPL36AP39-201ENST00000445859 318 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AC022106.1-201ENST00000612834 766 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 OR8G3P-202ENST00000641572 1255 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AC092821.2-201ENST00000545710 2042 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 MAK-202ENST00000354489 3941 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 AC061975.7-201ENST00000592016 2692 ntBASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 RPS3AP2-201ENST00000407190 754 ntBASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 AC022206.1-201ENST00000495947 347 ntBASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 NPM1P27-201ENST00000502784 830 ntBASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 MYL6-213ENST00000549017 502 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 TPRX1P1-201ENST00000557620 319 ntBASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 AC022325.1-201ENST00000502748 2199 ntBASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC88AQ3V6T2 NEPNP-201ENST00000404786 1371 ntBASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC7.65□□□□□ -1.19
CCDC88AQ3V6T2 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 BX323845.3-201ENST00000428215 527 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AL121776.1-201ENST00000429337 372 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 FMO7P-201ENST00000436045 768 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AC011225.1-201ENST00000457751 369 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AC027026.1-201ENST00000532323 742 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 ZNF322P1-201ENST00000568013 1209 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 CTNNA1P1-201ENST00000515849 2728 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AC110597.1-201ENST00000562669 3176 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 RNA5SP46-201ENST00000362370 120 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 SNORA21-201ENST00000362423 132 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 SNORD16-201ENST00000362803 99 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 RPS7P14-201ENST00000426405 583 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 HIGD1AP16-201ENST00000450986 258 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 RPS23P1-201ENST00000491662 432 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 IGKV2-18-201ENST00000522607 343 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 MIR1269B-201ENST00000580405 75 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 AC117409.1-201ENST00000470499 1310 ntBASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms