Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IGLVV-66-201ENST00000523818 341 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 ACTG1P15-201ENST00000570019 1063 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC090286.3-201ENST00000573133 187 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AL713998.2-201ENST00000604538 1198 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC100767.2-201ENST00000604840 693 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC093635.1-201ENST00000609028 555 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC006328.2-201ENST00000623198 397 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC012005.2-201ENST00000624333 397 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 OR7E91P-202ENST00000642062 1198 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.4□□□□□ -1.39
COL28A1Q2UY09 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 LYARP1-201ENST00000436977 1501 ntBASIC6.4□□□□□ -1.39
COL28A1Q2UY09 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL28A1Q2UY09 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 DLEU2L-201ENST00000371086 3555 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC007993.1-201ENST00000621298 2430 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 SLC20A1P1-201ENST00000413906 956 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC092865.3-201ENST00000425390 1026 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 LSM3P3-201ENST00000436601 306 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC006499.4-201ENST00000510947 694 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AP006245.2-201ENST00000522004 300 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC027369.2-201ENST00000528030 440 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 NPIPB14P-203ENST00000532298 987 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AL390726.5-202ENST00000564800 256 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 MIR4301-201ENST00000577203 66 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AP000919.1-201ENST00000582850 985 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 NPIPB1P-202ENST00000588786 828 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 OR7A11P-201ENST00000597719 953 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 BNIP3P7-201ENST00000605641 516 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AL133406.3-201ENST00000606817 541 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 MIR6730-201ENST00000622213 67 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 CGA-206ENST00000630630 832 ntTSL 2 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AP002800.1-201ENST00000624982 2225 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AP000547.3-204ENST00000588548 2523 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 AL022323.4-201ENST00000623980 13120 ntBASIC6.39□□□□□ -1.39
COL28A1Q2UY09 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL28A1Q2UY09 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms