Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
HLA-DMBP28068 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HLA-DMBP28068 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
HLA-DMBP28068 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
HLA-DMBP28068 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HLA-DMBP28068 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC4.86□□□□□ -1.63
HLA-DMBP28068 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HLA-DMBP28068 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC4.86□□□□□ -1.63
HLA-DMBP28068 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HLA-DMBP28068 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC4.86□□□□□ -1.63
HLA-DMBP28068 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HLA-DMBP28068 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
HLA-DMBP28068 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HLA-DMBP28068 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 IMMTP1-201ENST00000435590 2219 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AL359976.1-201ENST00000418655 3528 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 SNORD8-201ENST00000363915 110 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 RNA5SP140-201ENST00000364524 92 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 TMA16P2-201ENST00000413187 601 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 RPS17P17-201ENST00000419392 409 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 RPS18P1-201ENST00000447840 458 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 CCNJP1-201ENST00000450600 1149 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 PPIA-203ENST00000451562 544 ntTSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 YRDCP3-201ENST00000456507 480 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 AC004890.1-201ENST00000461005 181 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 RN7SL83P-201ENST00000468131 297 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 RPS3AP49-201ENST00000472161 790 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 CR383656.1-201ENST00000484916 377 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 AC114324.2-202ENST00000503812 134 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 BMS1P16-201ENST00000556075 1147 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 MIR4732-201ENST00000581873 76 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AL445649.1-201ENST00000615941 691 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 AL031658.2-201ENST00000616850 651 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 RAB28P4-201ENST00000622233 665 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AC063923.1-201ENST00000478982 1619 ntBASIC4.85□□□□□ -1.63
HLA-DMBP28068 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
HLA-DMBP28068 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-DMBP28068 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DMBP28068 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 AC005225.5-201ENST00000623547 2225 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DMBP28068 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DMBP28068 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DMBP28068 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC4.84□□□□□ -1.63
HLA-DMBP28068 RNA5SP308-201ENST00000362532 115 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 RNA5SP251-201ENST00000410614 137 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 UBE2V1P14-201ENST00000415815 558 ntBASIC4.84□□□□□ -1.63
HLA-DMBP28068 SMARCE1P1-201ENST00000417747 1186 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms