Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 MIR640-201ENST00000385086 96 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AC096537.2-201ENST00000413707 714 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 IPPKP1-201ENST00000422501 768 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 OSTCP4-201ENST00000424397 449 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 Z68868.1-201ENST00000429048 544 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AC091390.2-201ENST00000432573 374 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 OR2L9P-201ENST00000444456 913 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 OR52I1-201ENST00000450052 1050 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AC022415.1-202ENST00000486612 523 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 RN7SL561P-201ENST00000488553 281 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AP002453.1-201ENST00000492327 668 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 RPL5P11-201ENST00000498068 893 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AC090115.2-201ENST00000548060 883 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 BUB1P1-201ENST00000603541 607 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 AC020763.5-201ENST00000623298 430 ntBASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HDDC3Q8N4P3 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 EEF1A1P12-201ENST00000443590 1346 ntBASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AL139384.2-201ENST00000613809 3590 ntBASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AL137058.3-201ENST00000624531 3099 ntBASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AC023490.2-201ENST00000359859 470 ntBASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AL050305.1-201ENST00000399993 1230 ntBASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AC068228.1-201ENST00000461723 211 ntBASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AC008055.1-201ENST00000547032 609 ntBASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AC005632.2-201ENST00000564271 828 ntBASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 SNX18P12-201ENST00000624821 759 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms