Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 NEK2P2-201ENST00000438441 1338 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 EEF1A1P12-201ENST00000443590 1346 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 WDR95P-201ENST00000425638 1542 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 RNA5SP85-201ENST00000365378 119 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 RPL23AP85-201ENST00000421838 433 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 CYCSP52-201ENST00000422857 310 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC003989.1-201ENST00000434569 565 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL031681.1-201ENST00000443304 400 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL020997.1-201ENST00000446554 349 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 RN7SL413P-201ENST00000482700 297 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC015524.1-201ENST00000491585 472 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC114324.2-202ENST00000503812 134 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC133552.4-201ENST00000576103 676 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 RN7SL66P-201ENST00000582099 264 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC019257.2-201ENST00000605539 497 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 MIR6085-201ENST00000618314 110 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL157762.1-201ENST00000619612 415 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AL138693.1-201ENST00000622219 129 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC004836.1-201ENST00000623032 634 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC068213.1-201ENST00000625124 226 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SKA3Q8IX90 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.7□□□□□ -1.5
SKA3Q8IX90 AC010401.2-201ENST00000575137 4934 ntBASIC5.7□□□□□ -1.5
SKA3Q8IX90 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 AC006213.6-201ENST00000623722 4179 ntBASIC5.69□□□□□ -1.5
SKA3Q8IX90 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 AC005702.3-201ENST00000585345 1447 ntBASIC5.69□□□□□ -1.5
SKA3Q8IX90 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 TINAG-202ENST00000370864 692 ntTSL 2 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 AC245036.1-201ENST00000391727 309 ntBASIC5.69□□□□□ -1.5
SKA3Q8IX90 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SKA3Q8IX90 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 RPEP4-201ENST00000437636 602 ntBASIC5.69□□□□□ -1.5
SKA3Q8IX90 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC5.69□□□□□ -1.5
SKA3Q8IX90 AL445991.1-201ENST00000450381 475 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms