Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PDLIM3Q53GG5 AC129502.1-201ENST00000623261 1654 ntBASIC5.59□□□□□ -1.52
PDLIM3Q53GG5 AC112243.1-201ENST00000623949 3851 ntBASIC5.59□□□□□ -1.52
PDLIM3Q53GG5 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.52
PDLIM3Q53GG5 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
PDLIM3Q53GG5 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC5.59□□□□□ -1.52
PDLIM3Q53GG5 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
PDLIM3Q53GG5 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
PDLIM3Q53GG5 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC093909.5-201ENST00000621839 1799 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 HSP90AA2P-201ENST00000530115 2196 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 SNORA51.1-201ENST00000363243 140 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 FAUP2-201ENST00000394301 401 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 MTND3P20-201ENST00000407663 186 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 RN7SKP268-201ENST00000411107 316 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 PTPN2P1-201ENST00000423212 1072 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC115283.1-201ENST00000427353 400 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 BX119904.3-201ENST00000428194 957 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 LSM3P3-201ENST00000436601 306 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 NPM1P19-201ENST00000450070 712 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC093799.1-201ENST00000452411 499 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 PABPC1P10-201ENST00000464731 381 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 RPL34P34-201ENST00000465389 354 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 RPSAP48-201ENST00000466509 889 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 NDUFA5P5-201ENST00000468361 342 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 NACAP6-201ENST00000509572 622 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 GUSBP9-201ENST00000510138 584 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC051619.2-201ENST00000559063 397 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC026826.3-201ENST00000561747 158 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AL352984.2-201ENST00000611153 546 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AL118556.2-201ENST00000614375 824 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AP003400.2-201ENST00000624036 666 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AL121936.2-201ENST00000641935 662 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 DOCK11P1-201ENST00000553480 5932 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 WBP11P1-201ENST00000562560 1931 ntBASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC5.58□□□□□ -1.52
PDLIM3Q53GG5 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PDLIM3Q53GG5 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms