Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL28A1Q2UY09 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 ZNF658B-201ENST00000602828 3408 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC027279.1-201ENST00000568885 4284 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC007938.1-201ENST00000562524 2902 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC015871.3-201ENST00000618835 2261 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 FUNDC2P3-201ENST00000334716 533 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 MRPS21P5-201ENST00000417885 231 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 HMGN1P6-201ENST00000438508 291 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC131233.1-201ENST00000479200 955 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 PABPC1P1-201ENST00000506347 591 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC007068.2-201ENST00000543168 395 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC138473.1-201ENST00000605717 526 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AL021707.7-201ENST00000607991 416 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC004948.1-201ENST00000609858 672 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC016769.4-201ENST00000616893 535 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AL357140.4-201ENST00000636827 412 ntBASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.41□□□□□ -1.38
COL28A1Q2UY09 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AP004289.1-201ENST00000436307 2205 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC127070.3-201ENST00000503695 3263 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 COX6B1P3-201ENST00000312310 260 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 RNA5SP443-201ENST00000363083 132 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 CDY17P-201ENST00000414121 1282 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 RPL31P15-201ENST00000449770 338 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC009963.3-201ENST00000458090 486 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC068228.1-201ENST00000461723 211 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 RN7SL216P-201ENST00000471607 298 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 RPS14P8-201ENST00000478778 369 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 HMGN1P17-201ENST00000513734 295 ntBASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL28A1Q2UY09 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms