Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 RPA2P3-201ENST00000533268 770 ntBASIC6.62□□□□□ -1.35
COL4A4P53420 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.62□□□□□ -1.35
COL4A4P53420 AC015802.2-201ENST00000589690 189 ntBASIC6.62□□□□□ -1.35
COL4A4P53420 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.62□□□□□ -1.35
COL4A4P53420 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.62□□□□□ -1.35
COL4A4P53420 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.62□□□□□ -1.35
COL4A4P53420 TCL6_3.1-201ENST00000619064 137 ntBASIC6.62□□□□□ -1.35
COL4A4P53420 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.62□□□□□ -1.35
COL4A4P53420 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.62□□□□□ -1.35
COL4A4P53420 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.62□□□□□ -1.35
COL4A4P53420 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC6.62□□□□□ -1.35
COL4A4P53420 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.62□□□□□ -1.35
COL4A4P53420 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
COL4A4P53420 DNAH9-201ENST00000262442 13750 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 RPS2P45-201ENST00000469997 2057 ntBASIC6.62□□□□□ -1.35
COL4A4P53420 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 MAK-202ENST00000354489 3941 ntTSL 5 BASIC6.62□□□□□ -1.35
COL4A4P53420 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC6.62□□□□□ -1.35
COL4A4P53420 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.62□□□□□ -1.35
COL4A4P53420 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL4A4P53420 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL4A4P53420 SDHDP6-201ENST00000414693 480 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.61□□□□□ -1.35
COL4A4P53420 AL139415.1-201ENST00000424862 352 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 RPS27AP3-201ENST00000453803 454 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 RANP2-201ENST00000456833 229 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 RN7SL165P-201ENST00000477476 291 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AC022206.1-201ENST00000495947 347 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 NENFP3-201ENST00000503735 313 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 AC091965.3-201ENST00000506236 208 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 OR6M2P-201ENST00000529831 871 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.61□□□□□ -1.35
COL4A4P53420 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC6.61□□□□□ -1.35
COL4A4P53420 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 AC245014.3-201ENST00000618589 347 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 NEPNP-201ENST00000404786 1371 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AC024651.2-201ENST00000562480 2098 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 AC022325.1-201ENST00000502748 2199 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC6.61□□□□□ -1.35
COL4A4P53420 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 AC105342.1-201ENST00000378334 6848 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 RNA5SP333-201ENST00000363466 118 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 RNA5SP334-201ENST00000364825 118 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 RPS3AP2-201ENST00000407190 754 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 NPM1P4-201ENST00000414095 812 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC6.61□□□□□ -1.35
COL4A4P53420 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 RPS23P6-201ENST00000466136 431 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 EIF3LP3-201ENST00000495197 822 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AC090958.1-201ENST00000511122 351 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC6.61□□□□□ -1.35
COL4A4P53420 Y_RNA.710-201ENST00000516975 110 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.61□□□□□ -1.35
COL4A4P53420 OR4A40P-201ENST00000533878 948 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AC073916.1-201ENST00000545095 130 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AP005119.1-201ENST00000580956 292 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 AF117829.2-201ENST00000619538 361 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 AC004808.2-201ENST00000627965 773 ntBASIC6.61□□□□□ -1.35
COL4A4P53420 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms