Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX2P48431 FTO-215ENST00000636491 1676 ntTSL 5 BASIC5.81□□□□□ -1.48
SOX2P48431 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX2P48431 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC5.81□□□□□ -1.48
SOX2P48431 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX2P48431 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SOX2P48431 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SOX2P48431 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC009501.3-201ENST00000605001 1352 ntBASIC5.8□□□□□ -1.48
SOX2P48431 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 AL359263.1-201ENST00000441188 2796 ntBASIC5.8□□□□□ -1.48
SOX2P48431 CASP4-201ENST00000393150 1340 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
SOX2P48431 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 NRIR-202ENST00000414795 506 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 MARK2P12-201ENST00000420129 585 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 Z68868.1-201ENST00000429048 544 ntBASIC5.8□□□□□ -1.48
SOX2P48431 MRPL50P1-201ENST00000431951 384 ntBASIC5.8□□□□□ -1.48
SOX2P48431 ZNF965P-201ENST00000432501 817 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC011242.1-201ENST00000433596 1158 ntBASIC5.8□□□□□ -1.48
SOX2P48431 RPL14P5-201ENST00000436474 730 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC093581.1-204ENST00000442606 390 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 AL022068.1-208ENST00000447250 1016 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 HMGN1P5-201ENST00000448591 263 ntBASIC5.8□□□□□ -1.48
SOX2P48431 MTATP6P14-201ENST00000455189 673 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC5.8□□□□□ -1.48
SOX2P48431 MED28P7-201ENST00000456611 530 ntBASIC5.8□□□□□ -1.48
SOX2P48431 RPSAP24-201ENST00000461543 873 ntBASIC5.8□□□□□ -1.48
SOX2P48431 NDUFB4P1-201ENST00000462398 381 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AL928654.1-201ENST00000476081 354 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC108729.2-201ENST00000476543 840 ntBASIC5.8□□□□□ -1.48
SOX2P48431 PPP1R2P6-201ENST00000478565 588 ntBASIC5.8□□□□□ -1.48
SOX2P48431 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 AC092824.1-201ENST00000483524 576 ntBASIC5.8□□□□□ -1.48
SOX2P48431 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
SOX2P48431 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 AC017007.1-201ENST00000511960 415 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC034244.2-201ENST00000514668 858 ntBASIC5.8□□□□□ -1.48
SOX2P48431 MTCYBP44-201ENST00000514835 823 ntBASIC5.8□□□□□ -1.48
SOX2P48431 RNA5SP278-201ENST00000517055 102 ntBASIC5.8□□□□□ -1.48
SOX2P48431 SNORA76.2-201ENST00000517095 137 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC5.8□□□□□ -1.48
SOX2P48431 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC5.8□□□□□ -1.48
SOX2P48431 OR5D2P-201ENST00000524390 911 ntBASIC5.8□□□□□ -1.48
SOX2P48431 SSU72P6-201ENST00000532644 488 ntBASIC5.8□□□□□ -1.48
SOX2P48431 OSBPL9P3-201ENST00000534523 595 ntBASIC5.8□□□□□ -1.48
SOX2P48431 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 FAM192A-206ENST00000564108 1055 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC5.8□□□□□ -1.48
SOX2P48431 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX2P48431 AL157899.1-201ENST00000604110 936 ntBASIC5.8□□□□□ -1.48
SOX2P48431 HMGB1P51-201ENST00000605166 638 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC034236.3-201ENST00000605999 461 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC004241.2-201ENST00000614562 444 ntBASIC5.8□□□□□ -1.48
SOX2P48431 pRNA.9-201ENST00000618609 89 ntBASIC5.8□□□□□ -1.48
SOX2P48431 TCL6_3.1-201ENST00000619064 137 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC109809.1-201ENST00000619665 545 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC5.8□□□□□ -1.48
SOX2P48431 AC079298.2-201ENST00000623885 459 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AC008626.2-201ENST00000624425 248 ntBASIC5.8□□□□□ -1.48
SOX2P48431 AP003485.1-201ENST00000625093 753 ntBASIC5.8□□□□□ -1.48
SOX2P48431 RACK1-235ENST00000626067 564 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 FKBP1AP4-201ENST00000631775 336 ntBASIC5.8□□□□□ -1.48
SOX2P48431 OR4G3P-201ENST00000633500 913 ntBASIC5.8□□□□□ -1.48
SOX2P48431 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.8□□□□□ -1.48
SOX2P48431 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SOX2P48431 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX2P48431 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms