Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AP005639.1-201ENST00000526939 192 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC6.68□□□□□ -1.34
PTPN9P43378 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.68□□□□□ -1.34
PTPN9P43378 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.68□□□□□ -1.34
PTPN9P43378 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC6.68□□□□□ -1.34
PTPN9P43378 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC6.68□□□□□ -1.34
PTPN9P43378 AC026898.1-201ENST00000586404 571 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.68□□□□□ -1.34
PTPN9P43378 AL008723.3-201ENST00000608926 449 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC6.68□□□□□ -1.34
PTPN9P43378 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
PTPN9P43378 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.68□□□□□ -1.34
PTPN9P43378 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.67□□□□□ -1.34
PTPN9P43378 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
PTPN9P43378 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 AL355355.1-201ENST00000442900 793 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 AL133372.1-201ENST00000493565 745 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 MRPL57P6-201ENST00000506570 309 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
PTPN9P43378 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.67□□□□□ -1.34
PTPN9P43378 RNU4-18P-201ENST00000516751 149 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.67□□□□□ -1.34
PTPN9P43378 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 RN7SL475P-201ENST00000583379 298 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 MIR212-201ENST00000586026 110 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 AL352984.2-201ENST00000611153 546 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 AC024255.1-201ENST00000614376 102 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.67□□□□□ -1.34
PTPN9P43378 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 AC119674.1-213ENST00000641177 1386 ntBASIC6.67□□□□□ -1.34
PTPN9P43378 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
PTPN9P43378 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
PTPN9P43378 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.67□□□□□ -1.34
PTPN9P43378 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.67□□□□□ -1.34
PTPN9P43378 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.67□□□□□ -1.34
PTPN9P43378 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
PTPN9P43378 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.66□□□□□ -1.34
PTPN9P43378 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.66□□□□□ -1.34
PTPN9P43378 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.66□□□□□ -1.34
PTPN9P43378 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
PTPN9P43378 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
PTPN9P43378 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
PTPN9P43378 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.66□□□□□ -1.34
PTPN9P43378 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
PTPN9P43378 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
PTPN9P43378 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
PTPN9P43378 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
PTPN9P43378 RN7SKP129-201ENST00000410288 299 ntBASIC6.66□□□□□ -1.34
PTPN9P43378 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC6.66□□□□□ -1.34
PTPN9P43378 CYP4F30P-202ENST00000420048 405 ntBASIC6.66□□□□□ -1.34
PTPN9P43378 AC002127.1-201ENST00000421305 225 ntBASIC6.66□□□□□ -1.34
PTPN9P43378 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.66□□□□□ -1.34
PTPN9P43378 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms