Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC7.45□□□□□ -1.22
BRCA1P38398 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
BRCA1P38398 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC7.45□□□□□ -1.22
BRCA1P38398 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
BRCA1P38398 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 AL035555.1-201ENST00000404462 1790 ntBASIC7.45□□□□□ -1.22
BRCA1P38398 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 KRT73-AS1-203ENST00000552364 3808 ntTSL 2 BASIC7.45□□□□□ -1.22
BRCA1P38398 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC7.45□□□□□ -1.22
BRCA1P38398 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC7.45□□□□□ -1.22
BRCA1P38398 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.45□□□□□ -1.22
BRCA1P38398 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC7.45□□□□□ -1.22
BRCA1P38398 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC7.45□□□□□ -1.22
BRCA1P38398 AURKAPS1-201ENST00000451805 1212 ntBASIC7.45□□□□□ -1.22
BRCA1P38398 OR6M2P-201ENST00000529831 871 ntBASIC7.45□□□□□ -1.22
BRCA1P38398 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC7.45□□□□□ -1.22
BRCA1P38398 AL359704.2-201ENST00000604335 521 ntBASIC7.45□□□□□ -1.22
BRCA1P38398 TAS2R6P-201ENST00000605022 826 ntBASIC7.45□□□□□ -1.22
BRCA1P38398 AL021918.2-201ENST00000613415 194 ntBASIC7.45□□□□□ -1.22
BRCA1P38398 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 AP001784.1-201ENST00000624107 428 ntBASIC7.45□□□□□ -1.22
BRCA1P38398 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
BRCA1P38398 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
BRCA1P38398 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC7.44□□□□□ -1.22
BRCA1P38398 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
BRCA1P38398 AC009166.2-201ENST00000624410 2833 ntBASIC7.44□□□□□ -1.22
BRCA1P38398 AC110716.2-201ENST00000563865 3945 ntBASIC7.44□□□□□ -1.22
BRCA1P38398 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.44□□□□□ -1.22
BRCA1P38398 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
BRCA1P38398 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
BRCA1P38398 RN7SKP103-201ENST00000363848 320 ntBASIC7.44□□□□□ -1.22
BRCA1P38398 METTL15P3-201ENST00000415522 1221 ntBASIC7.44□□□□□ -1.22
BRCA1P38398 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC7.44□□□□□ -1.22
BRCA1P38398 RBMY2KP-201ENST00000418221 992 ntBASIC7.44□□□□□ -1.22
BRCA1P38398 AC092017.2-201ENST00000427600 362 ntBASIC7.44□□□□□ -1.22
BRCA1P38398 AL157777.1-201ENST00000468100 304 ntBASIC7.44□□□□□ -1.22
BRCA1P38398 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC7.44□□□□□ -1.22
BRCA1P38398 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC7.44□□□□□ -1.22
BRCA1P38398 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC7.44□□□□□ -1.22
BRCA1P38398 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC7.44□□□□□ -1.22
BRCA1P38398 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.44□□□□□ -1.22
BRCA1P38398 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC7.44□□□□□ -1.22
BRCA1P38398 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC7.44□□□□□ -1.22
BRCA1P38398 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.44□□□□□ -1.22
BRCA1P38398 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
BRCA1P38398 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 AF131215.2-201ENST00000531549 1710 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 NEK2P4-201ENST00000425793 1329 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 AL512310.3-201ENST00000547023 1335 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 AL589647.1-201ENST00000402485 466 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 AL133270.1-201ENST00000402635 279 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 RPA2P2-201ENST00000419698 796 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 IGKV1OR10-1-201ENST00000442306 329 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC7.43□□□□□ -1.22
BRCA1P38398 RN7SL172P-201ENST00000460535 303 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 BX284632.1-201ENST00000478218 541 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 AC092824.1-201ENST00000483524 576 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC7.43□□□□□ -1.22
BRCA1P38398 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.43□□□□□ -1.22
BRCA1P38398 SNORA43.3-201ENST00000517240 103 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC7.43□□□□□ -1.22
BRCA1P38398 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC7.43□□□□□ -1.22
BRCA1P38398 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.43□□□□□ -1.22
BRCA1P38398 AL049840.6-201ENST00000604583 345 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC7.43□□□□□ -1.22
BRCA1P38398 AC087565.3-203ENST00000641018 837 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
BRCA1P38398 AC004014.2-201ENST00000623718 5122 ntBASIC7.43□□□□□ -1.22
BRCA1P38398 COLGALT2-203ENST00000367521 4723 ntTSL 2 BASIC7.43□□□□□ -1.22
BRCA1P38398 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
BRCA1P38398 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC7.43□□□□□ -1.22
BRCA1P38398 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
BRCA1P38398 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms