Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 EEF1A1P29-201ENST00000416082 1096 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 AL139415.1-201ENST00000424862 352 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 AC113412.1-201ENST00000425840 504 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 AC073594.1-201ENST00000462065 364 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC7.66□□□□□ -1.18
COL5A3P25940 AC008629.2-201ENST00000503783 483 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC7.66□□□□□ -1.18
COL5A3P25940 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
COL5A3P25940 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC7.66□□□□□ -1.18
COL5A3P25940 MIR1273E-201ENST00000581165 102 ntBASIC7.66□□□□□ -1.18
COL5A3P25940 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC7.66□□□□□ -1.18
COL5A3P25940 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC7.66□□□□□ -1.18
COL5A3P25940 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 NHSL2-207ENST00000633930 13660 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
COL5A3P25940 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL5A3P25940 VPS8-207ENST00000436792 5011 ntAPPRIS ALT1 TSL 2 BASIC7.66□□□□□ -1.18
COL5A3P25940 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL5A3P25940 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL5A3P25940 AL731556.1-201ENST00000394628 3711 ntBASIC7.65□□□□□ -1.18
COL5A3P25940 AC235565.1-201ENST00000456962 1325 ntBASIC7.65□□□□□ -1.18
COL5A3P25940 CACNA1C-202ENST00000335762 6968 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.18
COL5A3P25940 LINC01963-201ENST00000562038 3148 ntBASIC7.65□□□□□ -1.18
COL5A3P25940 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL5A3P25940 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL5A3P25940 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC7.65□□□□□ -1.18
COL5A3P25940 NME1P1-201ENST00000420914 382 ntBASIC7.65□□□□□ -1.18
COL5A3P25940 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC7.65□□□□□ -1.18
COL5A3P25940 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC7.65□□□□□ -1.18
COL5A3P25940 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC7.65□□□□□ -1.18
COL5A3P25940 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC7.65□□□□□ -1.18
COL5A3P25940 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL5A3P25940 FAM27E4-201ENST00000605259 342 ntBASIC7.65□□□□□ -1.18
COL5A3P25940 AC024940.4-201ENST00000605507 246 ntBASIC7.65□□□□□ -1.18
COL5A3P25940 CTNNA1P1-201ENST00000515849 2728 ntBASIC7.65□□□□□ -1.18
COL5A3P25940 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC7.65□□□□□ -1.18
COL5A3P25940 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.65□□□□□ -1.19
COL5A3P25940 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL5A3P25940 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.19
COL5A3P25940 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.19
COL5A3P25940 AC011369.2-201ENST00000624423 1567 ntBASIC7.65□□□□□ -1.19
COL5A3P25940 AC011815.2-201ENST00000618230 2021 ntBASIC7.65□□□□□ -1.19
COL5A3P25940 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.19
COL5A3P25940 AC107398.3-201ENST00000562284 7000 ntBASIC7.65□□□□□ -1.19
COL5A3P25940 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.64□□□□□ -1.19
COL5A3P25940 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
COL5A3P25940 RN7SKP160-201ENST00000363804 340 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC7.64□□□□□ -1.19
COL5A3P25940 IGKV1OR10-1-201ENST00000442306 329 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 YWHAEP1-201ENST00000453697 763 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC7.64□□□□□ -1.19
COL5A3P25940 IGKV1OR22-5-201ENST00000458718 354 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AC006539.1-201ENST00000481419 501 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 OR7E157P-201ENST00000494376 911 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AL021368.3-201ENST00000607119 578 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.64□□□□□ -1.19
COL5A3P25940 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 AC011379.1-201ENST00000508713 3025 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 SALL4P7-201ENST00000555779 3120 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AC061975.7-201ENST00000592016 2692 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC7.64□□□□□ -1.19
COL5A3P25940 IL22RA2-201ENST00000296980 2886 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 U3.2-201ENST00000362981 210 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 OR2AT2P-201ENST00000413438 905 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC7.64□□□□□ -1.19
COL5A3P25940 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.64□□□□□ -1.19
COL5A3P25940 SDC4P-201ENST00000453285 601 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AL133445.1-201ENST00000467051 452 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AC023245.1-201ENST00000468501 517 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC7.64□□□□□ -1.19
COL5A3P25940 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL5A3P25940 OR7A1P-201ENST00000601206 970 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AC016769.4-201ENST00000616893 535 ntBASIC7.64□□□□□ -1.19
COL5A3P25940 AC241584.2-201ENST00000637142 2090 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC7.63□□□□□ -1.19
COL5A3P25940 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC7.63□□□□□ -1.19
COL5A3P25940 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC7.63□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms