Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
HERPUD2Q9BSE4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HERPUD2Q9BSE4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.53■□□□□ 0.88
HERPUD2Q9BSE4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.53■□□□□ 0.88
HERPUD2Q9BSE4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HERPUD2Q9BSE4 AP001271.2-201ENST00000624018 1556 ntBASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 GPX1P1-201ENST00000388829 606 ntBASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 AC023632.3-201ENST00000521633 145 ntBASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 AC133552.2-202ENST00000575694 574 ntBASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 PHGDH-210ENST00000641115 1638 ntBASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
HERPUD2Q9BSE4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
HERPUD2Q9BSE4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HERPUD2Q9BSE4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 AL121832.2-201ENST00000610979 668 ntBASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.5■□□□□ 0.87
HERPUD2Q9BSE4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 BX323043.1-201ENST00000641006 1765 ntBASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 HLA-G-202ENST00000376815 851 ntBASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 HLA-G-203ENST00000376818 1127 ntBASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 AC104771.1-201ENST00000603335 964 ntBASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 AL109923.1-201ENST00000618799 583 ntBASIC20.49■□□□□ 0.87
HERPUD2Q9BSE4 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms