Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 AC006128.1-201ENST00000624704 1661 ntBASIC20.22■□□□□ 0.83
CHFRQ96EP1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CHFRQ96EP1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHFRQ96EP1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHFRQ96EP1 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHFRQ96EP1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.2■□□□□ 0.82
CHFRQ96EP1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CHFRQ96EP1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHFRQ96EP1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHFRQ96EP1 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.2■□□□□ 0.82
CHFRQ96EP1 SLC25A3P1-201ENST00000443844 931 ntBASIC20.2■□□□□ 0.82
CHFRQ96EP1 AL049597.2-201ENST00000565575 961 ntBASIC20.2■□□□□ 0.82
CHFRQ96EP1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.2■□□□□ 0.82
CHFRQ96EP1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.2■□□□□ 0.82
CHFRQ96EP1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHFRQ96EP1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.2■□□□□ 0.82
CHFRQ96EP1 AC007225.1-201ENST00000566331 1836 ntBASIC20.2■□□□□ 0.82
CHFRQ96EP1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.2■□□□□ 0.82
CHFRQ96EP1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHFRQ96EP1 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHFRQ96EP1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHFRQ96EP1 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHFRQ96EP1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHFRQ96EP1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 ARMC10P1-201ENST00000313754 855 ntBASIC20.19■□□□□ 0.82
CHFRQ96EP1 AC004980.1-204ENST00000429707 299 ntBASIC20.19■□□□□ 0.82
CHFRQ96EP1 B3GAT3P1-201ENST00000471720 806 ntBASIC20.19■□□□□ 0.82
CHFRQ96EP1 AC011506.1-201ENST00000474329 610 ntBASIC20.19■□□□□ 0.82
CHFRQ96EP1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 AL031985.4-201ENST00000642138 673 ntBASIC20.19■□□□□ 0.82
CHFRQ96EP1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.19■□□□□ 0.82
CHFRQ96EP1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHFRQ96EP1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHFRQ96EP1 AC018553.1-201ENST00000616682 1458 ntBASIC20.18■□□□□ 0.82
CHFRQ96EP1 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHFRQ96EP1 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHFRQ96EP1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHFRQ96EP1 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHFRQ96EP1 KRT18P16-201ENST00000510337 1294 ntBASIC20.18■□□□□ 0.82
CHFRQ96EP1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 AC026271.3-201ENST00000571884 352 ntBASIC20.18■□□□□ 0.82
CHFRQ96EP1 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 KRT18P22-201ENST00000402024 1347 ntBASIC20.18■□□□□ 0.82
CHFRQ96EP1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.18■□□□□ 0.82
CHFRQ96EP1 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHFRQ96EP1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHFRQ96EP1 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHFRQ96EP1 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 AC010203.1-204ENST00000548782 407 ntBASIC20.17■□□□□ 0.82
CHFRQ96EP1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.17■□□□□ 0.82
CHFRQ96EP1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms