Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.03■□□□□ 0.32
USF3Q68DE3 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USF3Q68DE3 AL121829.2-201ENST00000620908 328 ntBASIC17.02■□□□□ 0.32
USF3Q68DE3 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USF3Q68DE3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.02■□□□□ 0.32
USF3Q68DE3 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
USF3Q68DE3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.02■□□□□ 0.32
USF3Q68DE3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.02■□□□□ 0.32
USF3Q68DE3 PLK5-205ENST00000642079 1969 ntBASIC17.02■□□□□ 0.32
USF3Q68DE3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF3Q68DE3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.02■□□□□ 0.32
USF3Q68DE3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.02■□□□□ 0.32
USF3Q68DE3 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF3Q68DE3 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.02■□□□□ 0.32
USF3Q68DE3 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.02■□□□□ 0.32
USF3Q68DE3 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.02■□□□□ 0.32
USF3Q68DE3 AF186192.3-201ENST00000583427 947 ntBASIC17.02■□□□□ 0.32
USF3Q68DE3 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
USF3Q68DE3 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
USF3Q68DE3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
USF3Q68DE3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.02■□□□□ 0.31
USF3Q68DE3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.01■□□□□ 0.31
USF3Q68DE3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.01■□□□□ 0.31
USF3Q68DE3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.01■□□□□ 0.31
USF3Q68DE3 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 AC073195.1-201ENST00000607241 877 ntBASIC17.01■□□□□ 0.31
USF3Q68DE3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.01■□□□□ 0.31
USF3Q68DE3 FEM1AP1-201ENST00000431297 1995 ntBASIC17.01■□□□□ 0.31
USF3Q68DE3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.01■□□□□ 0.31
USF3Q68DE3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.01■□□□□ 0.31
USF3Q68DE3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 AL049796.1-201ENST00000565336 1766 ntBASIC17.01■□□□□ 0.31
USF3Q68DE3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.01■□□□□ 0.31
USF3Q68DE3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
USF3Q68DE3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
USF3Q68DE3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
USF3Q68DE3 AL353807.1-201ENST00000427475 662 ntBASIC17.01■□□□□ 0.31
USF3Q68DE3 KRT16P5-201ENST00000455284 522 ntBASIC17.01■□□□□ 0.31
USF3Q68DE3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
USF3Q68DE3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF3Q68DE3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
USF3Q68DE3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
USF3Q68DE3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17■□□□□ 0.31
USF3Q68DE3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17■□□□□ 0.31
USF3Q68DE3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17■□□□□ 0.31
USF3Q68DE3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17■□□□□ 0.31
USF3Q68DE3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17■□□□□ 0.31
USF3Q68DE3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17■□□□□ 0.31
USF3Q68DE3 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17■□□□□ 0.31
USF3Q68DE3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 HTR7P1-201ENST00000538670 1336 ntBASIC17■□□□□ 0.31
USF3Q68DE3 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17■□□□□ 0.31
USF3Q68DE3 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 TMPOP1-202ENST00000424642 1267 ntBASIC17■□□□□ 0.31
USF3Q68DE3 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17■□□□□ 0.31
USF3Q68DE3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17■□□□□ 0.31
USF3Q68DE3 DUT-205ENST00000558813 769 ntTSL 2 BASIC17■□□□□ 0.31
USF3Q68DE3 TK2-213ENST00000563369 882 ntTSL 5 BASIC17■□□□□ 0.31
USF3Q68DE3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF3Q68DE3 AL121906.2-201ENST00000621597 723 ntBASIC17■□□□□ 0.31
USF3Q68DE3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USF3Q68DE3 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.99■□□□□ 0.31
USF3Q68DE3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USF3Q68DE3 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.99■□□□□ 0.31
USF3Q68DE3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC16.99■□□□□ 0.31
USF3Q68DE3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF3Q68DE3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.99■□□□□ 0.31
USF3Q68DE3 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.99■□□□□ 0.31
USF3Q68DE3 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF3Q68DE3 AL121603.2-201ENST00000557373 2117 ntBASIC16.99■□□□□ 0.31
USF3Q68DE3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USF3Q68DE3 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms