Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.1■□□□□ 0.97
USP41Q3LFD5 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.1■□□□□ 0.97
USP41Q3LFD5 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.1■□□□□ 0.97
USP41Q3LFD5 AC010331.1-201ENST00000611423 582 ntBASIC21.1■□□□□ 0.97
USP41Q3LFD5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP41Q3LFD5 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP41Q3LFD5 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.1■□□□□ 0.97
USP41Q3LFD5 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP41Q3LFD5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USP41Q3LFD5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.1■□□□□ 0.97
USP41Q3LFD5 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP41Q3LFD5 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
USP41Q3LFD5 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.09■□□□□ 0.97
USP41Q3LFD5 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP41Q3LFD5 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.09■□□□□ 0.97
USP41Q3LFD5 AC079598.2-202ENST00000546624 1451 ntBASIC21.09■□□□□ 0.97
USP41Q3LFD5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP41Q3LFD5 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP41Q3LFD5 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.09■□□□□ 0.97
USP41Q3LFD5 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.09■□□□□ 0.97
USP41Q3LFD5 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.09■□□□□ 0.97
USP41Q3LFD5 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.09■□□□□ 0.97
USP41Q3LFD5 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.09■□□□□ 0.97
USP41Q3LFD5 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP41Q3LFD5 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP41Q3LFD5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP41Q3LFD5 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
USP41Q3LFD5 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP41Q3LFD5 RCN1P1-201ENST00000400413 996 ntBASIC21.08■□□□□ 0.97
USP41Q3LFD5 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.08■□□□□ 0.97
USP41Q3LFD5 TFP1-202ENST00000475455 1573 ntBASIC21.08■□□□□ 0.97
USP41Q3LFD5 AC116562.2-201ENST00000507042 360 ntBASIC21.08■□□□□ 0.97
USP41Q3LFD5 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.08■□□□□ 0.97
USP41Q3LFD5 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.08■□□□□ 0.97
USP41Q3LFD5 AP000525.1-201ENST00000608286 694 ntBASIC21.08■□□□□ 0.97
USP41Q3LFD5 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
USP41Q3LFD5 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.08■□□□□ 0.97
USP41Q3LFD5 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.08■□□□□ 0.96
USP41Q3LFD5 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP41Q3LFD5 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP41Q3LFD5 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.07■□□□□ 0.96
USP41Q3LFD5 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.07■□□□□ 0.96
USP41Q3LFD5 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.07■□□□□ 0.96
USP41Q3LFD5 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.07■□□□□ 0.96
USP41Q3LFD5 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.07■□□□□ 0.96
USP41Q3LFD5 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 AC073130.3-201ENST00000624389 2278 ntBASIC21.07■□□□□ 0.96
USP41Q3LFD5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP41Q3LFD5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP41Q3LFD5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP41Q3LFD5 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP41Q3LFD5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP41Q3LFD5 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 C1QL1P1-201ENST00000568105 661 ntBASIC21.06■□□□□ 0.96
USP41Q3LFD5 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP41Q3LFD5 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
USP41Q3LFD5 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP41Q3LFD5 AC018553.1-201ENST00000616682 1458 ntBASIC21.06■□□□□ 0.96
USP41Q3LFD5 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP41Q3LFD5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP41Q3LFD5 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP41Q3LFD5 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP41Q3LFD5 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP41Q3LFD5 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP41Q3LFD5 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP41Q3LFD5 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP41Q3LFD5 MIR1238-201ENST00000408483 83 ntBASIC21.05■□□□□ 0.96
USP41Q3LFD5 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 YBX1P10-201ENST00000444752 975 ntBASIC21.05■□□□□ 0.96
USP41Q3LFD5 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 AC145285.6-201ENST00000604632 637 ntBASIC21.05■□□□□ 0.96
USP41Q3LFD5 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 AL031985.4-201ENST00000642138 673 ntBASIC21.05■□□□□ 0.96
USP41Q3LFD5 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP41Q3LFD5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms