Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
APOEP02649 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 POM121L13P-201ENST00000422362 380 ntBASIC20.74■□□□□ 0.91
APOEP02649 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.74■□□□□ 0.91
APOEP02649 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.74■□□□□ 0.91
APOEP02649 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.74■□□□□ 0.91
APOEP02649 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.74■□□□□ 0.91
APOEP02649 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.74■□□□□ 0.91
APOEP02649 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.74■□□□□ 0.91
APOEP02649 AC120498.8-201ENST00000614275 531 ntBASIC20.74■□□□□ 0.91
APOEP02649 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.74■□□□□ 0.91
APOEP02649 ITM2C-210ENST00000620962 501 ntBASIC20.74■□□□□ 0.91
APOEP02649 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.74■□□□□ 0.91
APOEP02649 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.74■□□□□ 0.91
APOEP02649 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
APOEP02649 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
APOEP02649 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
APOEP02649 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
APOEP02649 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.73■□□□□ 0.91
APOEP02649 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.73■□□□□ 0.91
APOEP02649 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
APOEP02649 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
APOEP02649 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
APOEP02649 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
APOEP02649 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
APOEP02649 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
APOEP02649 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.73■□□□□ 0.91
APOEP02649 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.73■□□□□ 0.91
APOEP02649 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
APOEP02649 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.73■□□□□ 0.91
APOEP02649 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
APOEP02649 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.73■□□□□ 0.91
APOEP02649 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
APOEP02649 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.73■□□□□ 0.91
APOEP02649 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
APOEP02649 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 KRT16P6-202ENST00000425692 1426 ntBASIC20.72■□□□□ 0.91
APOEP02649 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.72■□□□□ 0.91
APOEP02649 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 AIRN-201ENST00000601203 4374 ntBASIC20.72■□□□□ 0.91
APOEP02649 AC128676.1-201ENST00000454392 318 ntBASIC20.72■□□□□ 0.91
APOEP02649 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.72■□□□□ 0.91
APOEP02649 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.72■□□□□ 0.91
APOEP02649 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.72■□□□□ 0.91
APOEP02649 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
APOEP02649 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.71■□□□□ 0.91
APOEP02649 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
APOEP02649 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
APOEP02649 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
APOEP02649 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.71■□□□□ 0.91
APOEP02649 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
APOEP02649 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.71■□□□□ 0.91
APOEP02649 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.71■□□□□ 0.91
APOEP02649 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.71■□□□□ 0.91
APOEP02649 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 AC073648.6-201ENST00000641589 218 ntBASIC20.71■□□□□ 0.91
APOEP02649 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.71■□□□□ 0.91
APOEP02649 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
APOEP02649 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
APOEP02649 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
APOEP02649 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
APOEP02649 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
APOEP02649 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
APOEP02649 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
APOEP02649 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
APOEP02649 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
APOEP02649 RPS2P52-201ENST00000469610 820 ntBASIC20.7■□□□□ 0.9
APOEP02649 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.7■□□□□ 0.9
APOEP02649 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.7■□□□□ 0.9
APOEP02649 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.7■□□□□ 0.9
APOEP02649 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
APOEP02649 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
APOEP02649 AC069544.1-201ENST00000609399 999 ntBASIC20.7■□□□□ 0.9
APOEP02649 TMEM191A-211ENST00000637163 1067 ntBASIC20.7■□□□□ 0.9
APOEP02649 AFG3L1P-217ENST00000557444 2447 ntBASIC20.7■□□□□ 0.9
APOEP02649 AC112907.3-201ENST00000577781 2400 ntBASIC20.7■□□□□ 0.9
APOEP02649 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.7■□□□□ 0.9
APOEP02649 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
APOEP02649 AC099778.1-201ENST00000568593 1911 ntBASIC20.7■□□□□ 0.9
APOEP02649 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms