Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
RNF40O75150 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RNF40O75150 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF40O75150 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF40O75150 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF40O75150 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.29■■□□□ 1
RNF40O75150 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RNF40O75150 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.29■■□□□ 1
RNF40O75150 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.29■■□□□ 1
RNF40O75150 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.29■■□□□ 1
RNF40O75150 AC142381.4-202ENST00000563973 229 ntBASIC21.29■■□□□ 1
RNF40O75150 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.29■■□□□ 1
RNF40O75150 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
RNF40O75150 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.29■■□□□ 1
RNF40O75150 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RNF40O75150 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.28■■□□□ 1
RNF40O75150 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.28■■□□□ 1
RNF40O75150 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.28■■□□□ 1
RNF40O75150 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RNF40O75150 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.28■■□□□ 1
RNF40O75150 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RNF40O75150 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.28■■□□□ 1
RNF40O75150 UNC93B5-201ENST00000530315 699 ntBASIC21.28■■□□□ 1
RNF40O75150 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.28■■□□□ 1
RNF40O75150 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
RNF40O75150 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.28■■□□□ 1
RNF40O75150 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
RNF40O75150 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF40O75150 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
RNF40O75150 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
RNF40O75150 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.27■■□□□ 1
RNF40O75150 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.27■■□□□ 1
RNF40O75150 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.27■■□□□ 1
RNF40O75150 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.27■■□□□ 1
RNF40O75150 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 AL355472.2-201ENST00000422958 438 ntBASIC21.27■■□□□ 1
RNF40O75150 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.27■■□□□ 1
RNF40O75150 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 AC026366.1-201ENST00000488803 879 ntBASIC21.27■■□□□ 1
RNF40O75150 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.27■■□□□ 1
RNF40O75150 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.27■■□□□ 1
RNF40O75150 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
RNF40O75150 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
RNF40O75150 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF40O75150 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.27■□□□□ 0.99
RNF40O75150 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
RNF40O75150 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RNF40O75150 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.26■□□□□ 0.99
RNF40O75150 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
RNF40O75150 KRT17P1-201ENST00000399211 1546 ntBASIC21.26■□□□□ 0.99
RNF40O75150 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
RNF40O75150 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.26■□□□□ 0.99
RNF40O75150 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF40O75150 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF40O75150 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.26■□□□□ 0.99
RNF40O75150 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.26■□□□□ 0.99
RNF40O75150 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.26■□□□□ 0.99
RNF40O75150 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.26■□□□□ 0.99
RNF40O75150 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RNF40O75150 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF40O75150 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.26■□□□□ 0.99
RNF40O75150 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF40O75150 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF40O75150 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.25■□□□□ 0.99
RNF40O75150 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
RNF40O75150 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RNF40O75150 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms