Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC006128.1-201ENST00000624704 1661 ntBASIC19.4■□□□□ 0.7
SDC3O75056 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.39■□□□□ 0.7
SDC3O75056 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
SDC3O75056 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SDC3O75056 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC3O75056 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.39■□□□□ 0.69
SDC3O75056 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC3O75056 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.39■□□□□ 0.69
SDC3O75056 AL445228.2-201ENST00000605589 952 ntBASIC19.39■□□□□ 0.69
SDC3O75056 AC005363.2-201ENST00000618631 242 ntBASIC19.39■□□□□ 0.69
SDC3O75056 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.39■□□□□ 0.69
SDC3O75056 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC3O75056 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC3O75056 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.39■□□□□ 0.69
SDC3O75056 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SDC3O75056 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.39■□□□□ 0.69
SDC3O75056 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC3O75056 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.38■□□□□ 0.69
SDC3O75056 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC3O75056 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC3O75056 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.38■□□□□ 0.69
SDC3O75056 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.38■□□□□ 0.69
SDC3O75056 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC3O75056 CYP2D8P-201ENST00000433633 1490 ntBASIC19.38■□□□□ 0.69
SDC3O75056 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.38■□□□□ 0.69
SDC3O75056 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SDC3O75056 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.38■□□□□ 0.69
SDC3O75056 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC3O75056 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.38■□□□□ 0.69
SDC3O75056 LINC01568-207ENST00000641790 1380 ntBASIC19.38■□□□□ 0.69
SDC3O75056 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.37■□□□□ 0.69
SDC3O75056 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SDC3O75056 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.37■□□□□ 0.69
SDC3O75056 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
SDC3O75056 AC005521.1-201ENST00000393351 872 ntBASIC19.37■□□□□ 0.69
SDC3O75056 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.37■□□□□ 0.69
SDC3O75056 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.37■□□□□ 0.69
SDC3O75056 KRT18P57-201ENST00000443599 1254 ntBASIC19.37■□□□□ 0.69
SDC3O75056 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.37■□□□□ 0.69
SDC3O75056 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.37■□□□□ 0.69
SDC3O75056 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC3O75056 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
SDC3O75056 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.36■□□□□ 0.69
SDC3O75056 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.36■□□□□ 0.69
SDC3O75056 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.36■□□□□ 0.69
SDC3O75056 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
SDC3O75056 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.36■□□□□ 0.69
SDC3O75056 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.36■□□□□ 0.69
SDC3O75056 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.36■□□□□ 0.69
SDC3O75056 NAPSB-206ENST00000562112 1266 ntBASIC19.36■□□□□ 0.69
SDC3O75056 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.36■□□□□ 0.69
SDC3O75056 AC026310.3-201ENST00000625186 2373 ntBASIC19.36■□□□□ 0.69
SDC3O75056 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC3O75056 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.36■□□□□ 0.69
SDC3O75056 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SDC3O75056 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SDC3O75056 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
SDC3O75056 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SDC3O75056 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.35■□□□□ 0.69
SDC3O75056 AC007225.1-201ENST00000566331 1836 ntBASIC19.35■□□□□ 0.69
SDC3O75056 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.35■□□□□ 0.69
SDC3O75056 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SDC3O75056 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.35■□□□□ 0.69
SDC3O75056 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.35■□□□□ 0.69
SDC3O75056 AC116562.2-201ENST00000507042 360 ntBASIC19.35■□□□□ 0.69
SDC3O75056 KRT18P35-201ENST00000510488 1269 ntBASIC19.35■□□□□ 0.69
SDC3O75056 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SDC3O75056 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SDC3O75056 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.35■□□□□ 0.69
SDC3O75056 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC3O75056 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.35■□□□□ 0.69
SDC3O75056 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms