Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC018659.2-201ENST00000624690 715 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC011369.2-201ENST00000624423 1567 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 BIN2P1-201ENST00000504996 1530 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC067942.1-201ENST00000488045 1493 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 PSMC1P6-201ENST00000477233 1319 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 LDHAP5-201ENST00000394996 622 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 RPL18AP14-201ENST00000417685 526 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC022080.2-201ENST00000452932 533 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 RN7SL165P-201ENST00000477476 291 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 RPL5P14-201ENST00000494197 878 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC022206.1-201ENST00000495947 347 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC087273.2-201ENST00000519038 634 ntTSL 3 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC008429.2-201ENST00000523057 864 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 AP003080.1-202ENST00000526526 915 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 SETP17-201ENST00000534163 817 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 RN7SL270P-201ENST00000579643 281 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 MRPL57P3-201ENST00000619218 176 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 MBD5-221ENST00000637159 902 ntTSL 5 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.6□□□□□ -1.51
NKX3-1Q99801 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AL137058.3-201ENST00000624531 3099 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NKX3-1Q99801 AL049634.1-201ENST00000453770 1720 ntBASIC5.6□□□□□ -1.51
NKX3-1Q99801 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NKX3-1Q99801 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AP003170.5-201ENST00000397185 335 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 MRPS21P5-201ENST00000417885 231 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC000089.1-201ENST00000424559 801 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 PA2G4P1-201ENST00000442248 1197 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC099340.1-201ENST00000475247 599 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 B3GNTL1P1-201ENST00000509174 289 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 CARSP2-201ENST00000520688 277 ntBASIC5.59□□□□□ -1.51
NKX3-1Q99801 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC5.59□□□□□ -1.51
NKX3-1Q99801 ASB8-207ENST00000536953 923 ntTSL 2 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 141.9 ms