Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 TEK-204ENST00000519097 3836 ntTSL 2 BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AC011379.1-201ENST00000508713 3025 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AL451046.1-201ENST00000406097 534 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 UQCRHP1-204ENST00000424609 274 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 SCARNA5-201ENST00000516201 276 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AC002310.3-201ENST00000569728 723 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AC008507.3-201ENST00000585753 472 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AP001437.1-201ENST00000608783 456 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 SLC9B1P1-201ENST00000331172 1337 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AC008627.1-201ENST00000517511 1704 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 AC087392.3-202ENST00000358446 1754 ntBASIC1.96□□□□□ -2.09
SYNE1Q8NF91 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC015799.1-201ENST00000622996 3122 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 TRIM51HP-202ENST00000530412 1823 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC104837.1-201ENST00000444644 1587 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 RN7SKP121-201ENST00000410842 305 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC022826.1-201ENST00000519383 805 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AL162632.2-201ENST00000553933 399 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC091768.1-201ENST00000609258 930 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 DENND2C-201ENST00000393274 6163 ntTSL 5 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 HNRNPA1P18-201ENST00000433537 927 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC073850.1-201ENST00000449243 255 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 HMGN1P17-201ENST00000513734 295 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC087575.1-201ENST00000585087 229 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC010463.3-201ENST00000594077 500 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AL359704.2-201ENST00000604335 521 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AL357140.4-201ENST00000636827 412 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 CASC19-232ENST00000641480 1244 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 CASC19-274ENST00000642018 970 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC119674.1-202ENST00000641333 1860 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 SNORA11-201ENST00000408789 128 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 RPS14P4-201ENST00000415880 418 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 RN7SL362P-201ENST00000494228 267 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 RBBP4P1-201ENST00000502424 1276 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 AC005393.1-201ENST00000617916 584 ntBASIC1.96□□□□□ -2.1
SYNE1Q8NF91 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC1.96□□□□□ -2.1
SYNE1Q8NF91 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 147.2 ms