Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 USP37-204ENST00000418019 3353 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 USP32P2-201ENST00000412260 4329 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 DHX57-203ENST00000457308 4859 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 SLC2A3P4-201ENST00000521259 1471 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 PAH-201ENST00000307000 2466 ntTSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AL133243.4-201ENST00000623116 3109 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 MTFR2-205ENST00000451457 1524 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 MIR555-201ENST00000384987 96 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 RPL5P8-201ENST00000396820 815 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 GRXCR1-201ENST00000399770 991 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 SNORA2C-201ENST00000408564 137 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 TAS2R2P-201ENST00000421146 910 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC234064.1-201ENST00000436312 247 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC098483.1-201ENST00000438623 955 ntTSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 RHEBP1-201ENST00000448647 556 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 RHEBP2-201ENST00000450289 600 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 ATP5A1P7-201ENST00000453978 1279 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AL133351.3-201ENST00000454998 193 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC010486.2-201ENST00000505572 483 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 RN7SKP248-201ENST00000516278 305 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC083843.1-201ENST00000521444 849 ntTSL 4 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC084337.1-201ENST00000524809 686 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 ATP5J2P4-201ENST00000538774 267 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC006581.1-201ENST00000545706 496 ntTSL 3 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 RPL3P13-201ENST00000550415 216 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC023080.1-201ENST00000551663 931 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC022884.3-201ENST00000579571 248 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC005244.1-201ENST00000582566 339 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC015688.2-201ENST00000584523 262 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 RPS11-203ENST00000596873 583 ntTSL 2 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 Z94722.1-201ENST00000604328 474 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC099676.1-201ENST00000608886 657 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 U1.31-201ENST00000620022 160 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 RN7SL680P-201ENST00000620379 299 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC027506.1-201ENST00000621395 198 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC021106.3-201ENST00000623925 531 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC017037.3-201ENST00000625016 472 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 U6.107-201ENST00000637108 79 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 FGL2-202ENST00000637771 989 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 AC104454.1-201ENST00000421341 1401 ntBASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
TRAIPQ9BWF2 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 CACNB4-263ENST00000637779 1772 ntTSL 5 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 MTCO1P6-201ENST00000481192 1384 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 NSRP1P1-201ENST00000444067 1693 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 APP-209ENST00000440126 2846 ntTSL 2 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 CEP41-203ENST00000343969 1087 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC8.25□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms