Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 FUNDC2P3-201ENST00000334716 533 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 RNA5SP350-201ENST00000363298 111 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SHMT2P34897 SNORA70H-201ENST00000383910 135 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 SNORA70J-201ENST00000384182 135 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AL050335.1-201ENST00000396909 869 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AP003170.5-201ENST00000397185 335 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SHMT2P34897 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.28□□□□□ -1.4
SHMT2P34897 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.28□□□□□ -1.4
SHMT2P34897 RPL5P12-201ENST00000477071 851 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AC022415.1-202ENST00000486612 523 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.28□□□□□ -1.4
SHMT2P34897 AC022206.1-201ENST00000495947 347 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AC092349.1-201ENST00000504903 310 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AC091965.3-201ENST00000506236 208 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.28□□□□□ -1.4
SHMT2P34897 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.28□□□□□ -1.4
SHMT2P34897 SUMO2P19-201ENST00000518920 295 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AC135983.3-201ENST00000528049 1226 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 RPL41P2-201ENST00000544920 409 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.28□□□□□ -1.4
SHMT2P34897 MT1CP-201ENST00000567054 174 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AC138207.8-204ENST00000579588 527 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.28□□□□□ -1.4
SHMT2P34897 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.28□□□□□ -1.4
SHMT2P34897 AC004836.1-201ENST00000623032 634 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.28□□□□□ -1.4
SHMT2P34897 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SHMT2P34897 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.28□□□□□ -1.4
SHMT2P34897 AC068769.1-201ENST00000474767 2426 ntBASIC6.28□□□□□ -1.4
SHMT2P34897 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.28□□□□□ -1.4
SHMT2P34897 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.28□□□□□ -1.4
SHMT2P34897 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SHMT2P34897 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SHMT2P34897 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SHMT2P34897 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.27□□□□□ -1.4
SHMT2P34897 IMMTP1-201ENST00000435590 2219 ntBASIC6.27□□□□□ -1.4
SHMT2P34897 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.27□□□□□ -1.4
SHMT2P34897 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.27□□□□□ -1.41
SHMT2P34897 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.27□□□□□ -1.41
SHMT2P34897 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 AC125238.2-201ENST00000430003 1440 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.27□□□□□ -1.41
SHMT2P34897 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.27□□□□□ -1.41
SHMT2P34897 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.27□□□□□ -1.41
SHMT2P34897 MGAT2P1-201ENST00000449718 797 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 RN7SL39P-201ENST00000462264 297 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.27□□□□□ -1.41
SHMT2P34897 AP001000.1-201ENST00000526843 742 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 AL133399.1-201ENST00000527476 298 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 AC090115.2-201ENST00000548060 883 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC6.27□□□□□ -1.41
SHMT2P34897 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.27□□□□□ -1.41
SHMT2P34897 AC026898.1-201ENST00000586404 571 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.27□□□□□ -1.41
SHMT2P34897 AC012368.3-201ENST00000604190 219 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 AC097467.4-201ENST00000605504 141 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.27□□□□□ -1.41
SHMT2P34897 SAGE3P-201ENST00000619800 1635 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.27□□□□□ -1.41
SHMT2P34897 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
SHMT2P34897 AC007159.1-201ENST00000566529 4706 ntBASIC6.27□□□□□ -1.41
SHMT2P34897 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SHMT2P34897 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.26□□□□□ -1.41
SHMT2P34897 AC005332.9-201ENST00000620266 2921 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SHMT2P34897 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.26□□□□□ -1.41
SHMT2P34897 AC006213.6-201ENST00000623722 4179 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 RNA5SP251-201ENST00000410614 137 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 RNA5SP115-201ENST00000411160 107 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC6.26□□□□□ -1.41
SHMT2P34897 GTF3AP6-201ENST00000432585 986 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 LINC00328-2P-201ENST00000436585 219 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.26□□□□□ -1.41
SHMT2P34897 AC098818.1-201ENST00000478593 252 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 RPL29P23-201ENST00000486188 442 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 AC117500.1-201ENST00000497352 755 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.26□□□□□ -1.41
SHMT2P34897 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC6.26□□□□□ -1.41
SHMT2P34897 CYCSP25-201ENST00000525280 316 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SHMT2P34897 AP003033.2-201ENST00000528901 805 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SHMT2P34897 AC233699.1-201ENST00000569955 1168 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.26□□□□□ -1.41
SHMT2P34897 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.26□□□□□ -1.41
SHMT2P34897 AC063977.7-201ENST00000594454 337 ntBASIC6.26□□□□□ -1.41
SHMT2P34897 AL589765.6-201ENST00000601909 549 ntBASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms