Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 AC111000.6-201ENST00000514471 709 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AP004609.2-201ENST00000532177 190 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.84□□□□□ -1.63
CXCL1P09341 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC4.84□□□□□ -1.63
CXCL1P09341 HIGD1AP9-201ENST00000550710 279 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AC023794.4-201ENST00000551732 754 ntTSL 5 BASIC4.84□□□□□ -1.63
CXCL1P09341 AC093524.1-201ENST00000564266 1094 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AC124283.2-201ENST00000575085 318 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 LINC01892-201ENST00000579141 507 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 BOLA2P1-201ENST00000584794 232 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 AC011487.2-201ENST00000600193 1228 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 AC092960.1-201ENST00000604762 351 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AL031777.2-201ENST00000611953 196 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AC116165.3-201ENST00000614524 400 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 RMDN2-AS1-210ENST00000630021 1053 ntTSL 5 BASIC4.84□□□□□ -1.63
CXCL1P09341 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC4.84□□□□□ -1.64
CXCL1P09341 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CXCL1P09341 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 MRRFP1-201ENST00000435941 1675 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 AC002525.1-201ENST00000624392 1622 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 EEF1A1P30-201ENST00000429708 1315 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 OR5P3-201ENST00000328375 936 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CXCL1P09341 RNA5SP280-201ENST00000411230 115 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 AC079809.1-201ENST00000415468 276 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 FTO-202ENST00000431610 707 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 IGLV3-4-201ENST00000432300 244 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 AC138761.5-201ENST00000433967 325 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 AL096803.1-201ENST00000456921 1021 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 TUBBP11-201ENST00000472255 252 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 PPP1R2P6-201ENST00000478565 588 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 RPSAP51-201ENST00000497462 645 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 MTCYBP44-201ENST00000514835 823 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 LINC02322-201ENST00000554773 338 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL1P09341 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 AC087499.3-201ENST00000578210 717 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL1P09341 NDUFA3P1-201ENST00000588007 252 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 MIR132-201ENST00000591554 101 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 AL049840.5-201ENST00000602827 552 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 AC005070.2-201ENST00000604391 260 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 AL022394.1-201ENST00000606979 292 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 AC008626.2-201ENST00000624425 248 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 METTL15-210ENST00000634721 1182 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CXCL1P09341 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CXCL1P09341 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 HSPA8P14-201ENST00000552265 1805 ntBASIC4.83□□□□□ -1.64
CXCL1P09341 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL1P09341 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL1P09341 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL1P09341 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC4.82□□□□□ -1.64
CXCL1P09341 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL1P09341 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC4.82□□□□□ -1.64
CXCL1P09341 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
CXCL1P09341 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL1P09341 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL1P09341 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC4.82□□□□□ -1.64
CXCL1P09341 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL1P09341 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL1P09341 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms