Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 PSPC1P2-201ENST00000455130 225 ntBASIC8.14□□□□□ -1.11
LIG1P18858 PGBD4P1-201ENST00000473644 407 ntBASIC8.14□□□□□ -1.11
LIG1P18858 AC026254.2-201ENST00000475295 371 ntBASIC8.14□□□□□ -1.11
LIG1P18858 RPS14P8-201ENST00000478778 369 ntBASIC8.14□□□□□ -1.11
LIG1P18858 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC8.14□□□□□ -1.11
LIG1P18858 AC093663.2-201ENST00000484625 313 ntBASIC8.14□□□□□ -1.11
LIG1P18858 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC8.14□□□□□ -1.11
LIG1P18858 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC8.14□□□□□ -1.11
LIG1P18858 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC8.14□□□□□ -1.11
LIG1P18858 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC8.14□□□□□ -1.11
LIG1P18858 ATP5J2P4-201ENST00000538774 267 ntBASIC8.14□□□□□ -1.11
LIG1P18858 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 TDGP1-201ENST00000543961 1229 ntBASIC8.14□□□□□ -1.11
LIG1P18858 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC8.14□□□□□ -1.11
LIG1P18858 OR5BK1P-201ENST00000550421 823 ntBASIC8.14□□□□□ -1.11
LIG1P18858 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC8.14□□□□□ -1.11
LIG1P18858 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 STARD6-202ENST00000577499 696 ntTSL 2 BASIC8.14□□□□□ -1.11
LIG1P18858 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 AC006116.6-201ENST00000593258 1103 ntBASIC8.14□□□□□ -1.11
LIG1P18858 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC8.14□□□□□ -1.11
LIG1P18858 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 AL136139.1-201ENST00000605568 222 ntBASIC8.14□□□□□ -1.11
LIG1P18858 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 FKBP1AP4-201ENST00000631775 336 ntBASIC8.14□□□□□ -1.11
LIG1P18858 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC8.14□□□□□ -1.11
LIG1P18858 AL590396.3-201ENST00000636334 300 ntBASIC8.14□□□□□ -1.11
LIG1P18858 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC8.14□□□□□ -1.11
LIG1P18858 DDX43P1-201ENST00000510713 1763 ntBASIC8.14□□□□□ -1.11
LIG1P18858 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 TET1P1-201ENST00000426627 2301 ntBASIC8.14□□□□□ -1.11
LIG1P18858 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC8.14□□□□□ -1.11
LIG1P18858 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 Z98755.1-201ENST00000407015 1384 ntBASIC8.13□□□□□ -1.11
LIG1P18858 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
LIG1P18858 Y_RNA.62-201ENST00000362840 99 ntBASIC8.13□□□□□ -1.11
LIG1P18858 RN7SKP62-201ENST00000384539 329 ntBASIC8.13□□□□□ -1.11
LIG1P18858 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
LIG1P18858 RNU6-648P-201ENST00000410190 107 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AC096533.1-201ENST00000411645 353 ntBASIC8.13□□□□□ -1.11
LIG1P18858 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 KRR1P1-201ENST00000419430 803 ntBASIC8.13□□□□□ -1.11
LIG1P18858 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 PTP4A1P7-201ENST00000423476 514 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC8.13□□□□□ -1.11
LIG1P18858 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC8.13□□□□□ -1.11
LIG1P18858 ZNF965P-201ENST00000432501 817 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 AC073648.4-201ENST00000442655 781 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AL034399.1-201ENST00000451535 380 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 DEFB109A-201ENST00000482450 265 ntBASIC8.13□□□□□ -1.11
LIG1P18858 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC8.13□□□□□ -1.11
LIG1P18858 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
LIG1P18858 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC8.13□□□□□ -1.11
LIG1P18858 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC8.13□□□□□ -1.11
LIG1P18858 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC8.13□□□□□ -1.11
LIG1P18858 AC103833.1-201ENST00000517442 172 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AP001207.2-201ENST00000519490 539 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC8.13□□□□□ -1.11
LIG1P18858 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC8.13□□□□□ -1.11
LIG1P18858 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC8.13□□□□□ -1.11
LIG1P18858 FXNP1-201ENST00000555153 337 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AC024614.1-201ENST00000577546 307 ntBASIC8.13□□□□□ -1.11
LIG1P18858 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC8.13□□□□□ -1.11
LIG1P18858 PLEKHA3P1-201ENST00000598554 894 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AC020765.1-201ENST00000604296 328 ntBASIC8.13□□□□□ -1.11
LIG1P18858 RN7SL778P-201ENST00000607160 297 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AC009318.3-201ENST00000616916 503 ntBASIC8.13□□□□□ -1.11
LIG1P18858 AC068792.1-201ENST00000621354 417 ntBASIC8.13□□□□□ -1.11
LIG1P18858 SMIM11B-203ENST00000622934 1193 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC8.13□□□□□ -1.11
LIG1P18858 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
LIG1P18858 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
LIG1P18858 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 AC112243.1-201ENST00000623949 3851 ntBASIC8.13□□□□□ -1.11
LIG1P18858 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC8.13□□□□□ -1.11
LIG1P18858 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms