Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TCP11X1-202ENST00000622971 1372 ntBASIC4.86□□□□□ -1.63
CXCL1P09341 AC016583.1-201ENST00000624221 2431 ntBASIC4.86□□□□□ -1.63
CXCL1P09341 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL1P09341 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL1P09341 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL1P09341 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC4.86□□□□□ -1.63
CXCL1P09341 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL1P09341 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL1P09341 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CXCL1P09341 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CXCL1P09341 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CXCL1P09341 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
CXCL1P09341 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 SNORA55-201ENST00000364587 135 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 RNA5SP478-201ENST00000364657 115 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 U3.14-201ENST00000365363 227 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 TYMSP1-201ENST00000407851 869 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AL161725.1-203ENST00000415004 1081 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL1P09341 DPPA2P2-201ENST00000418220 897 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
CXCL1P09341 AL050320.1-201ENST00000420044 446 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL1P09341 SPATA20P1-201ENST00000423089 438 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC4.85□□□□□ -1.63
CXCL1P09341 KRT18P53-201ENST00000431919 117 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 LINC01221-201ENST00000432488 662 ntTSL 3 BASIC4.85□□□□□ -1.63
CXCL1P09341 NPM1P18-201ENST00000434232 732 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC4.85□□□□□ -1.63
CXCL1P09341 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL1P09341 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC4.85□□□□□ -1.63
CXCL1P09341 AC019080.2-201ENST00000453859 394 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AL133480.2-201ENST00000456723 487 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 RPL7AP56-201ENST00000476420 791 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 RN7SL654P-201ENST00000479178 292 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AC012123.2-201ENST00000485809 248 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL1P09341 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL1P09341 AL359219.2-201ENST00000555184 348 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL1P09341 AC091304.4-201ENST00000565703 620 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL1P09341 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC4.85□□□□□ -1.63
CXCL1P09341 OR7A8P-201ENST00000595427 913 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL1P09341 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC4.85□□□□□ -1.63
CXCL1P09341 AL590032.1-201ENST00000604920 252 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AP001264.1-201ENST00000620602 703 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AC138965.3-201ENST00000623875 498 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AC018692.2-201ENST00000624130 348 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 AC026108.1-201ENST00000635444 547 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 AC003985.2-201ENST00000562268 1669 ntBASIC4.85□□□□□ -1.63
CXCL1P09341 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL1P09341 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL1P09341 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL1P09341 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CXCL1P09341 OR5M2P-202ENST00000641241 4242 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.63
CXCL1P09341 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.84□□□□□ -1.63
CXCL1P09341 AC096921.2-201ENST00000561507 1916 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 AC006484.1-201ENST00000435086 1884 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC4.84□□□□□ -1.63
CXCL1P09341 ZNF806-201ENST00000438300 1774 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 ALOX5AP-201ENST00000380490 904 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL1P09341 RNA5SP177-201ENST00000410122 107 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 NRIR-202ENST00000414795 506 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC4.84□□□□□ -1.63
CXCL1P09341 NIF3L1-206ENST00000416651 967 ntTSL 2 BASIC4.84□□□□□ -1.63
CXCL1P09341 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 RPL29P7-201ENST00000440227 457 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 CYCSP51-201ENST00000443545 318 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 GAPDHP14-201ENST00000450472 937 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AC133965.1-201ENST00000452984 354 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 GCSAM-202ENST00000460387 623 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL1P09341 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CXCL1P09341 RPL7P17-201ENST00000470927 724 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AL928654.1-201ENST00000476081 354 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC4.84□□□□□ -1.63
CXCL1P09341 AC105420.1-201ENST00000504389 582 ntBASIC4.84□□□□□ -1.63
CXCL1P09341 LINC01184-206ENST00000508878 968 ntTSL 5 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms