Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
NKX3-1Q99801 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NKX3-1Q99801 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NKX3-1Q99801 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
NKX3-1Q99801 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC099654.3-201ENST00000447087 1546 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NKX3-1Q99801 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NKX3-1Q99801 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 STAG3L4-201ENST00000352103 530 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 RN7SKP296-201ENST00000411185 341 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 YWHAZP5-201ENST00000419975 730 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC007568.1-201ENST00000422912 471 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 E2F6P1-201ENST00000428850 745 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AL355355.1-201ENST00000442900 793 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AL354714.5-201ENST00000450131 590 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 RN7SL267P-201ENST00000485107 261 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AP000926.3-201ENST00000497201 299 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC021146.11-201ENST00000503319 491 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC113191.1-201ENST00000517759 403 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC044839.3-201ENST00000532068 860 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 SETP3-201ENST00000581726 813 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 MIR5682-201ENST00000584864 76 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AL353729.2-201ENST00000605859 1249 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC004836.1-201ENST00000623032 634 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AC091059.2-201ENST00000623355 614 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.65□□□□□ -1.5
NKX3-1Q99801 AL121936.2-201ENST00000641935 662 ntBASIC5.65□□□□□ -1.5
NKX3-1Q99801 AL731532.1-201ENST00000623972 4236 ntBASIC5.65□□□□□ -1.51
NKX3-1Q99801 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
NKX3-1Q99801 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
NKX3-1Q99801 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
NKX3-1Q99801 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC5.65□□□□□ -1.51
NKX3-1Q99801 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.65□□□□□ -1.51
NKX3-1Q99801 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
NKX3-1Q99801 AC011815.2-201ENST00000618230 2021 ntBASIC5.65□□□□□ -1.51
NKX3-1Q99801 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.65□□□□□ -1.51
NKX3-1Q99801 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.65□□□□□ -1.51
NKX3-1Q99801 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
NKX3-1Q99801 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
NKX3-1Q99801 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
NKX3-1Q99801 AC093297.3-201ENST00000607056 2517 ntBASIC5.65□□□□□ -1.51
NKX3-1Q99801 AC006600.2-201ENST00000624834 2506 ntBASIC5.65□□□□□ -1.51
NKX3-1Q99801 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC005725.1-201ENST00000577346 2607 ntBASIC5.64□□□□□ -1.51
NKX3-1Q99801 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
NKX3-1Q99801 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 METTL5-202ENST00000308099 629 ntTSL 3 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.64□□□□□ -1.51
NKX3-1Q99801 RPS26P11-201ENST00000463445 348 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms