Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC00469-203ENST00000579749 583 ntTSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 AC004477.2-201ENST00000583349 192 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 CEBPG-202ENST00000585933 3845 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 ZNF493-205ENST00000596302 546 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 AC073534.1-201ENST00000598671 1056 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AC243772.3-202ENST00000609662 1148 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AC106782.6-201ENST00000611264 512 ntBASIC7.6□□□□□ -1.19
MSX1P28360 ST7-OT4_3.1-201ENST00000615542 293 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AL022318.4-202ENST00000622217 591 ntTSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 CU638689.4-203ENST00000625185 785 ntTSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 LINC01620-205ENST00000637248 546 ntTSL 4 BASIC7.6□□□□□ -1.19
MSX1P28360 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 SEPT4-202ENST00000317268 1784 ntAPPRIS P4 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 STK32B-204ENST00000510398 3241 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 GTF2IRD2P1-201ENST00000449689 2749 ntBASIC7.6□□□□□ -1.19
MSX1P28360 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 DHRS9-202ENST00000412271 1465 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 SORBS1-204ENST00000361941 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
MSX1P28360 CASC19-206ENST00000641028 1430 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AC010680.2-201ENST00000603521 2117 ntBASIC7.6□□□□□ -1.19
MSX1P28360 PACRG-201ENST00000337019 1619 ntTSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 APH1B-201ENST00000261879 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC7.59□□□□□ -1.19
MSX1P28360 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC7.59□□□□□ -1.19
MSX1P28360 TMEM169-201ENST00000295658 3342 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.19
MSX1P28360 MKNK1-AS1-201ENST00000602433 2445 ntTSL 2 BASIC7.59□□□□□ -1.19
MSX1P28360 MATR3-201ENST00000394805 4843 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 CPB2-AS1-204ENST00000606991 3218 ntTSL 2 BASIC7.59□□□□□ -1.19
MSX1P28360 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
MSX1P28360 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
MSX1P28360 AHCYP5-201ENST00000331585 1238 ntBASIC7.59□□□□□ -1.19
MSX1P28360 RPL12-201ENST00000361436 633 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 RNA5SP263-201ENST00000363376 128 ntBASIC7.59□□□□□ -1.19
MSX1P28360 RN7SKP48-201ENST00000365031 328 ntBASIC7.59□□□□□ -1.19
MSX1P28360 Y_RNA.372-201ENST00000365599 102 ntBASIC7.59□□□□□ -1.19
MSX1P28360 CST11-201ENST00000377007 461 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 IGFL2-201ENST00000377693 607 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 FAM107B-202ENST00000378458 1284 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.19
MSX1P28360 MTIF3-202ENST00000381120 1005 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 NPM1P46-201ENST00000399556 865 ntBASIC7.59□□□□□ -1.19
MSX1P28360 RPL5P20-201ENST00000403848 896 ntBASIC7.59□□□□□ -1.19
MSX1P28360 FCF1P10-201ENST00000407590 479 ntBASIC7.59□□□□□ -1.19
MSX1P28360 LINC01799-201ENST00000411701 386 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 HMGB3P31-201ENST00000413333 595 ntBASIC7.59□□□□□ -1.19
MSX1P28360 GNAI2P2-201ENST00000417003 916 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AC066692.1-201ENST00000421721 457 ntBASIC7.59□□□□□ -1.19
MSX1P28360 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 LINC02088-201ENST00000428134 620 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 RPE-205ENST00000429907 925 ntTSL 2 BASIC7.59□□□□□ -1.19
MSX1P28360 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 TRMT2B-AS1-201ENST00000443801 205 ntTSL 5 BASIC7.59□□□□□ -1.19
MSX1P28360 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC7.59□□□□□ -1.19
MSX1P28360 MTCO2P25-201ENST00000447065 681 ntBASIC7.59□□□□□ -1.19
MSX1P28360 RPL4P2-201ENST00000447259 1282 ntBASIC7.59□□□□□ -1.19
MSX1P28360 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC7.59□□□□□ -1.19
MSX1P28360 MTCO3P11-201ENST00000455103 774 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 AF186996.2-201ENST00000508347 907 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AC124067.1-201ENST00000517897 169 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 OR5AK1P-201ENST00000524837 922 ntBASIC7.59□□□□□ -1.19
MSX1P28360 LINC00678-201ENST00000527083 786 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 STXBP6-204ENST00000546511 1223 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 AC144548.1-201ENST00000549577 324 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC7.59□□□□□ -1.19
MSX1P28360 AC092287.1-201ENST00000565782 463 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 AL391840.1-201ENST00000571144 367 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AC025198.1-201ENST00000578331 419 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AC008737.3-201ENST00000601661 221 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 AC016876.3-201ENST00000610459 426 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AC131902.3-201ENST00000611767 581 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AC131159.2-201ENST00000613236 702 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC7.59□□□□□ -1.19
MSX1P28360 LINC02391-201ENST00000615716 800 ntTSL 5 BASIC7.59□□□□□ -1.19
MSX1P28360 TNIK-210ENST00000470834 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 AGTPBP1-202ENST00000357081 4393 ntTSL 5 BASIC7.59□□□□□ -1.19
MSX1P28360 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSX1P28360 PSG9-205ENST00000443718 1421 ntTSL 2 BASIC7.59□□□□□ -1.19
MSX1P28360 AC073349.2-201ENST00000427545 1603 ntBASIC7.59□□□□□ -1.19
MSX1P28360 AC097662.1-204ENST00000396588 2214 ntTSL 2 BASIC7.59□□□□□ -1.19
MSX1P28360 ZNF331-216ENST00000511593 1985 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.2
MSX1P28360 SAG-201ENST00000409110 1591 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.2
MSX1P28360 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC7.59□□□□□ -1.2
MSX1P28360 AC130456.1-201ENST00000565085 1363 ntBASIC7.59□□□□□ -1.2
MSX1P28360 LGSN-201ENST00000370657 1949 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms