Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNU4-5P-201ENST00000607255 135 ntBASIC8.16□□□□□ -1.1
LIG1P18858 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC8.16□□□□□ -1.1
LIG1P18858 AC004241.3-201ENST00000611728 517 ntBASIC8.16□□□□□ -1.1
LIG1P18858 FRG2MP-201ENST00000613317 856 ntBASIC8.16□□□□□ -1.1
LIG1P18858 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
LIG1P18858 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC8.16□□□□□ -1.1
LIG1P18858 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC8.16□□□□□ -1.1
LIG1P18858 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC8.16□□□□□ -1.1
LIG1P18858 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC8.16□□□□□ -1.1
LIG1P18858 LINC02211-204ENST00000642024 1070 ntBASIC8.16□□□□□ -1.1
LIG1P18858 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC8.16□□□□□ -1.1
LIG1P18858 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC8.16□□□□□ -1.1
LIG1P18858 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LIG1P18858 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
LIG1P18858 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC8.15□□□□□ -1.1
LIG1P18858 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
LIG1P18858 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 ALB-220ENST00000621628 1606 ntTSL 5 BASIC8.15□□□□□ -1.1
LIG1P18858 AC022507.1-201ENST00000548349 1505 ntBASIC8.15□□□□□ -1.1
LIG1P18858 Z93929.1-201ENST00000418200 1475 ntBASIC8.15□□□□□ -1.1
LIG1P18858 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
LIG1P18858 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
LIG1P18858 SNORD115-48-201ENST00000364764 76 ntBASIC8.15□□□□□ -1.1
LIG1P18858 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 MTND1P10-201ENST00000426108 832 ntBASIC8.15□□□□□ -1.1
LIG1P18858 AC092447.2-201ENST00000435487 669 ntBASIC8.15□□□□□ -1.1
LIG1P18858 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC8.15□□□□□ -1.1
LIG1P18858 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC8.15□□□□□ -1.1
LIG1P18858 LRRC37A14P-201ENST00000452297 462 ntBASIC8.15□□□□□ -1.1
LIG1P18858 RPL32P14-201ENST00000463196 378 ntBASIC8.15□□□□□ -1.1
LIG1P18858 AC008620.1-201ENST00000468453 592 ntBASIC8.15□□□□□ -1.1
LIG1P18858 TUBBP11-201ENST00000472255 252 ntBASIC8.15□□□□□ -1.1
LIG1P18858 RPL5P15-201ENST00000475870 897 ntBASIC8.15□□□□□ -1.1
LIG1P18858 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC8.15□□□□□ -1.1
LIG1P18858 AC095057.1-201ENST00000507583 168 ntBASIC8.15□□□□□ -1.1
LIG1P18858 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 AC126177.6-201ENST00000550420 1009 ntBASIC8.15□□□□□ -1.1
LIG1P18858 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 AC007599.1-201ENST00000568688 1174 ntBASIC8.15□□□□□ -1.1
LIG1P18858 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC8.15□□□□□ -1.1
LIG1P18858 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC8.15□□□□□ -1.1
LIG1P18858 AC024451.4-201ENST00000602578 752 ntBASIC8.15□□□□□ -1.1
LIG1P18858 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 AC108865.2-201ENST00000606881 432 ntBASIC8.15□□□□□ -1.1
LIG1P18858 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC8.15□□□□□ -1.1
LIG1P18858 AL590410.1-201ENST00000617925 333 ntBASIC8.15□□□□□ -1.1
LIG1P18858 AC091544.5-201ENST00000620192 3815 ntBASIC8.15□□□□□ -1.1
LIG1P18858 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.1
LIG1P18858 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC8.15□□□□□ -1.1
LIG1P18858 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.1
LIG1P18858 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC8.15□□□□□ -1.11
LIG1P18858 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC8.15□□□□□ -1.11
LIG1P18858 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC8.15□□□□□ -1.11
LIG1P18858 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC8.15□□□□□ -1.11
LIG1P18858 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
LIG1P18858 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.11
LIG1P18858 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC8.15□□□□□ -1.11
LIG1P18858 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC8.14□□□□□ -1.11
LIG1P18858 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 RNU6-40P-201ENST00000384254 107 ntBASIC8.14□□□□□ -1.11
LIG1P18858 TRAV35-201ENST00000390462 330 ntBASIC8.14□□□□□ -1.11
LIG1P18858 TYMSP1-201ENST00000407851 869 ntBASIC8.14□□□□□ -1.11
LIG1P18858 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC8.14□□□□□ -1.11
LIG1P18858 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
LIG1P18858 SLC20A1P1-201ENST00000413906 956 ntBASIC8.14□□□□□ -1.11
LIG1P18858 AC091492.1-201ENST00000419844 272 ntBASIC8.14□□□□□ -1.11
LIG1P18858 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC8.14□□□□□ -1.11
LIG1P18858 CENPN-204ENST00000428963 971 ntTSL 2 BASIC8.14□□□□□ -1.11
LIG1P18858 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 AL392003.1-201ENST00000434394 243 ntBASIC8.14□□□□□ -1.11
LIG1P18858 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC8.14□□□□□ -1.11
LIG1P18858 MTCYBP21-201ENST00000443300 1113 ntBASIC8.14□□□□□ -1.11
LIG1P18858 AL096829.2-201ENST00000446582 742 ntBASIC8.14□□□□□ -1.11
LIG1P18858 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC8.14□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms