Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 MTND5P23-201ENST00000430812 1655 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 RNU2-22P-201ENST00000411266 212 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 AC098592.2-201ENST00000413158 265 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 VN1R31P-201ENST00000417498 730 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 AL672212.1-201ENST00000422246 400 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 RPL17P2-201ENST00000491913 451 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 RNA5SP318-201ENST00000516352 92 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 EEF1B2P2-201ENST00000519625 676 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 AC010287.1-201ENST00000566916 357 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 AC111186.1-201ENST00000604684 130 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 AC022001.1-201ENST00000605193 268 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 AL352984.2-202ENST00000613699 155 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 MRPL57P3-201ENST00000619218 176 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 AC017037.4-201ENST00000624526 826 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
VMP1Q96GC9 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.45□□□□□ -1.38
VMP1Q96GC9 MTCO1P28-201ENST00000574177 1528 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 AC027279.1-201ENST00000568885 4284 ntBASIC6.45□□□□□ -1.38
VMP1Q96GC9 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
VMP1Q96GC9 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
VMP1Q96GC9 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 AC009220.2-201ENST00000489759 1751 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.44□□□□□ -1.38
VMP1Q96GC9 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
VMP1Q96GC9 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 RNU6-1331P-201ENST00000363658 106 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 MIR541-201ENST00000401360 84 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 AL713922.1-201ENST00000416477 747 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 RPL3P11-201ENST00000434028 1146 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 SEPT7P3-201ENST00000455017 621 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 AC022730.1-201ENST00000473114 568 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 RN7SL379P-201ENST00000479912 293 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 RN7SL267P-201ENST00000485107 261 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 TFP1-203ENST00000490470 561 ntTSL 4 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 AC021146.10-201ENST00000515628 706 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 AP005902.2-201ENST00000518393 307 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 ACER3-213ENST00000533873 929 ntTSL 2 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 NXPE2P1-201ENST00000543705 726 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 MIR744-201ENST00000578242 98 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 MIR4312-201ENST00000579909 76 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 AC010615.3-201ENST00000597319 394 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC6.44□□□□□ -1.38
VMP1Q96GC9 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.44□□□□□ -1.38
VMP1Q96GC9 AC021422.1-201ENST00000621212 473 ntBASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms