Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SDHDP6-201ENST00000414693 480 ntBASIC10.4□□□□□ -0.74
CUX1P39880 AC245884.2-201ENST00000426257 404 ntBASIC10.4□□□□□ -0.74
CUX1P39880 AC091965.3-201ENST00000506236 208 ntBASIC10.4□□□□□ -0.74
CUX1P39880 AC115837.1-201ENST00000517662 1001 ntBASIC10.4□□□□□ -0.74
CUX1P39880 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC10.4□□□□□ -0.74
CUX1P39880 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC10.4□□□□□ -0.74
CUX1P39880 MIR4776-2-201ENST00000580204 80 ntBASIC10.4□□□□□ -0.74
CUX1P39880 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
CUX1P39880 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX1P39880 AP002833.3-201ENST00000625075 2265 ntBASIC10.4□□□□□ -0.74
CUX1P39880 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC10.4□□□□□ -0.75
CUX1P39880 GNL2P1-201ENST00000451274 2190 ntBASIC10.4□□□□□ -0.75
CUX1P39880 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC10.39□□□□□ -0.75
CUX1P39880 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC10.39□□□□□ -0.75
CUX1P39880 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CUX1P39880 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC10.39□□□□□ -0.75
CUX1P39880 OR3A2-201ENST00000408891 1076 ntBASIC10.39□□□□□ -0.75
CUX1P39880 RN7SKP161-201ENST00000411110 305 ntBASIC10.39□□□□□ -0.75
CUX1P39880 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC10.39□□□□□ -0.75
CUX1P39880 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC10.39□□□□□ -0.75
CUX1P39880 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC10.39□□□□□ -0.75
CUX1P39880 RPS23P6-201ENST00000466136 431 ntBASIC10.39□□□□□ -0.75
CUX1P39880 RPSAP37-201ENST00000470913 821 ntBASIC10.39□□□□□ -0.75
CUX1P39880 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CUX1P39880 SNORA58-201ENST00000505219 137 ntBASIC10.39□□□□□ -0.75
CUX1P39880 SNORA70.20-201ENST00000516848 126 ntBASIC10.39□□□□□ -0.75
CUX1P39880 RPA2P3-201ENST00000533268 770 ntBASIC10.39□□□□□ -0.75
CUX1P39880 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC10.39□□□□□ -0.75
CUX1P39880 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC10.39□□□□□ -0.75
CUX1P39880 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC10.39□□□□□ -0.75
CUX1P39880 AL137067.2-201ENST00000621202 131 ntBASIC10.39□□□□□ -0.75
CUX1P39880 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CUX1P39880 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
CUX1P39880 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CUX1P39880 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC10.39□□□□□ -0.75
CUX1P39880 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
CUX1P39880 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC10.39□□□□□ -0.75
CUX1P39880 DGKB-206ENST00000407950 3651 ntTSL 5 BASIC10.39□□□□□ -0.75
CUX1P39880 MAPK10-261ENST00000641050 3109 ntBASIC10.39□□□□□ -0.75
CUX1P39880 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CUX1P39880 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
CUX1P39880 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CUX1P39880 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CUX1P39880 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC10.39□□□□□ -0.75
CUX1P39880 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
CUX1P39880 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
CUX1P39880 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC10.38□□□□□ -0.75
CUX1P39880 AC007394.1-201ENST00000421941 531 ntBASIC10.38□□□□□ -0.75
CUX1P39880 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC10.38□□□□□ -0.75
CUX1P39880 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC10.38□□□□□ -0.75
CUX1P39880 TUBB4BP6-201ENST00000437576 479 ntBASIC10.38□□□□□ -0.75
CUX1P39880 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC10.38□□□□□ -0.75
CUX1P39880 AC002486.2-201ENST00000447806 590 ntBASIC10.38□□□□□ -0.75
CUX1P39880 AL122020.1-201ENST00000472287 459 ntBASIC10.38□□□□□ -0.75
CUX1P39880 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC10.38□□□□□ -0.75
CUX1P39880 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC10.38□□□□□ -0.75
CUX1P39880 AC090651.1-201ENST00000567865 634 ntBASIC10.38□□□□□ -0.75
CUX1P39880 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC10.38□□□□□ -0.75
CUX1P39880 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC10.38□□□□□ -0.75
CUX1P39880 AP000864.1-201ENST00000609424 650 ntBASIC10.38□□□□□ -0.75
CUX1P39880 MALAT1-202ENST00000534336 8708 ntBASIC10.38□□□□□ -0.75
CUX1P39880 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CUX1P39880 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
CUX1P39880 RPS2P45-201ENST00000469997 2057 ntBASIC10.38□□□□□ -0.75
CUX1P39880 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC10.38□□□□□ -0.75
CUX1P39880 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC10.38□□□□□ -0.75
CUX1P39880 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CUX1P39880 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CUX1P39880 MIR375-201ENST00000362103 64 ntBASIC10.38□□□□□ -0.75
CUX1P39880 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CUX1P39880 RNU6-171P-201ENST00000384354 107 ntBASIC10.38□□□□□ -0.75
CUX1P39880 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC10.38□□□□□ -0.75
CUX1P39880 RBPJP7-201ENST00000442803 1447 ntBASIC10.38□□□□□ -0.75
CUX1P39880 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC10.38□□□□□ -0.75
CUX1P39880 SUMO2P1-206ENST00000445436 284 ntBASIC10.38□□□□□ -0.75
CUX1P39880 AC073909.1-201ENST00000447112 999 ntBASIC10.38□□□□□ -0.75
CUX1P39880 EIF4A1P6-201ENST00000448133 1210 ntBASIC10.38□□□□□ -0.75
CUX1P39880 RBPJP5-201ENST00000449433 1447 ntBASIC10.38□□□□□ -0.75
CUX1P39880 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC10.38□□□□□ -0.75
CUX1P39880 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC10.38□□□□□ -0.75
CUX1P39880 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC10.38□□□□□ -0.75
CUX1P39880 AC027026.1-201ENST00000532323 742 ntBASIC10.38□□□□□ -0.75
CUX1P39880 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
CUX1P39880 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
CUX1P39880 OR7A11P-201ENST00000597719 953 ntBASIC10.38□□□□□ -0.75
CUX1P39880 LAPTM4BP2-201ENST00000604542 446 ntBASIC10.38□□□□□ -0.75
CUX1P39880 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CUX1P39880 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
CUX1P39880 EXOC5-211ENST00000621441 10589 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CUX1P39880 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC10.37□□□□□ -0.75
CUX1P39880 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CUX1P39880 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CUX1P39880 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CUX1P39880 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CUX1P39880 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
CUX1P39880 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC10.37□□□□□ -0.75
CUX1P39880 AL355433.1-201ENST00000422804 300 ntBASIC10.37□□□□□ -0.75
CUX1P39880 AC011225.1-201ENST00000457751 369 ntBASIC10.37□□□□□ -0.75
CUX1P39880 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC10.37□□□□□ -0.75
CUX1P39880 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC10.37□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms