Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC093278.2-201ENST00000564956 2485 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC241584.2-201ENST00000637142 2090 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 MRPS21P5-201ENST00000417885 231 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 ARMC4P1-201ENST00000438905 707 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 TVP23CP1-201ENST00000450317 639 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC135983.3-201ENST00000528049 1226 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 OR9L1P-201ENST00000529493 933 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AL591767.3-201ENST00000554632 525 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 SYPL1P2-201ENST00000582878 727 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AL589765.6-201ENST00000601909 549 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AL049840.5-201ENST00000602827 552 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AL138895.2-201ENST00000603019 178 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AP002345.2-201ENST00000609961 904 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AL589935.2-201ENST00000616471 1231 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC034229.6-201ENST00000623704 224 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 OFD1P10Y-201ENST00000434110 1433 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AC120036.2-201ENST00000509729 1474 ntBASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC6.66□□□□□ -1.34
HDDC3Q8N4P3 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 MRPS6P2-201ENST00000381143 370 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 YWHAZP6-201ENST00000399764 738 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC008753.1-201ENST00000423096 284 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 FABP5P1-201ENST00000423401 411 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 RPL12P16-201ENST00000431098 498 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 GAPDHP59-201ENST00000435908 267 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AL020997.1-201ENST00000446554 349 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 SULT1D1P-201ENST00000458020 882 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 SNX18P25-201ENST00000510539 758 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC108103.1-201ENST00000511286 446 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC133552.4-201ENST00000576103 676 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AL365181.4-201ENST00000609800 547 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AP000577.1-201ENST00000624366 878 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 AC073488.9-201ENST00000631601 754 ntBASIC6.65□□□□□ -1.34
HDDC3Q8N4P3 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms