Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL356289.3-201ENST00000640049 2669 ntBASIC7.65□□□□□ -1.18
MSX1P28360 LINC01739-205ENST00000641890 573 ntBASIC7.65□□□□□ -1.18
MSX1P28360 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC7.65□□□□□ -1.19
MSX1P28360 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC7.65□□□□□ -1.19
MSX1P28360 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.19
MSX1P28360 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.19
MSX1P28360 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.19
MSX1P28360 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
MSX1P28360 AC011379.1-201ENST00000508713 3025 ntBASIC7.65□□□□□ -1.19
MSX1P28360 TRIM6-212ENST00000621176 3005 ntTSL 5 BASIC7.65□□□□□ -1.19
MSX1P28360 ZNF33A-208ENST00000628825 2854 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.19
MSX1P28360 SLC9B2-201ENST00000362026 2300 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 FBXO38-203ENST00000394370 4132 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 TRIO-201ENST00000344135 4065 ntTSL 2 BASIC7.64□□□□□ -1.19
MSX1P28360 GOSR2-232ENST00000640051 3964 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 FLT1-203ENST00000540678 1927 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 PPARG-201ENST00000287820 1850 ntAPPRIS P4 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 EIF4BP2-201ENST00000416702 1794 ntBASIC7.64□□□□□ -1.19
MSX1P28360 LINC02282-201ENST00000535153 1655 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 ATP9B-208ENST00000586722 1650 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 UGT2B24P-201ENST00000514441 1597 ntBASIC7.64□□□□□ -1.19
MSX1P28360 FMO9P-202ENST00000488458 1535 ntBASIC7.64□□□□□ -1.19
MSX1P28360 CAMK2D-214ENST00000515496 1533 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 DAZ1-202ENST00000405239 4421 ntAPPRIS P5 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 EEF1A1P10-201ENST00000475365 1390 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AL512604.2-201ENST00000426946 1314 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 AC024610.2-203ENST00000636084 1348 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 AC012467.2-201ENST00000607783 2583 ntBASIC7.64□□□□□ -1.19
MSX1P28360 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 RNU1-47P-201ENST00000362966 163 ntBASIC7.64□□□□□ -1.19
MSX1P28360 ARR3-202ENST00000374495 1298 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 MIR654-201ENST00000385199 81 ntBASIC7.64□□□□□ -1.19
MSX1P28360 SNORA57.2-201ENST00000391265 128 ntBASIC7.64□□□□□ -1.19
MSX1P28360 TDGF1P4-201ENST00000401555 520 ntBASIC7.64□□□□□ -1.19
MSX1P28360 NRBF2P2-201ENST00000413087 861 ntBASIC7.64□□□□□ -1.19
MSX1P28360 LINC00676-201ENST00000416090 474 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 LINC00426-202ENST00000417079 1045 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.64□□□□□ -1.19
MSX1P28360 LINC00160-201ENST00000430635 693 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 CYP4F26P-202ENST00000433357 852 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC7.64□□□□□ -1.19
MSX1P28360 AC073614.1-201ENST00000438690 650 ntBASIC7.64□□□□□ -1.19
MSX1P28360 LINC01185-201ENST00000439412 554 ntTSL 4 BASIC7.64□□□□□ -1.19
MSX1P28360 TRIM60P16-201ENST00000444048 694 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 AL133215.1-201ENST00000447344 342 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC7.64□□□□□ -1.19
MSX1P28360 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 RPS27P12-201ENST00000464146 258 ntBASIC7.64□□□□□ -1.19
MSX1P28360 PGBD4P1-201ENST00000473644 407 ntBASIC7.64□□□□□ -1.19
MSX1P28360 ADAM3A-206ENST00000484602 1046 ntTSL 2 BASIC7.64□□□□□ -1.19
MSX1P28360 RPL5P33-201ENST00000487833 905 ntBASIC7.64□□□□□ -1.19
MSX1P28360 RN7SL135P-201ENST00000490144 278 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AC109462.1-201ENST00000491087 368 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC7.64□□□□□ -1.19
MSX1P28360 Y_RNA.701-201ENST00000516812 110 ntBASIC7.64□□□□□ -1.19
MSX1P28360 KCTD9P6-201ENST00000522306 950 ntBASIC7.64□□□□□ -1.19
MSX1P28360 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC7.64□□□□□ -1.19
MSX1P28360 IGKV2D-14-201ENST00000522473 355 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 LINC02385-201ENST00000547554 428 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 AC027020.1-202ENST00000557839 429 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 AC103968.1-201ENST00000557841 573 ntBASIC7.64□□□□□ -1.19
MSX1P28360 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 BCAP31P2-201ENST00000563143 399 ntBASIC7.64□□□□□ -1.19
MSX1P28360 APOOP5-202ENST00000564761 566 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 BCAP31P1-201ENST00000565437 385 ntBASIC7.64□□□□□ -1.19
MSX1P28360 MYLK-221ENST00000583087 678 ntTSL 4 BASIC7.64□□□□□ -1.19
MSX1P28360 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC7.64□□□□□ -1.19
MSX1P28360 AC103792.1-201ENST00000603591 919 ntBASIC7.64□□□□□ -1.19
MSX1P28360 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 AC099676.1-201ENST00000608886 657 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 AL353726.1-201ENST00000614041 1000 ntBASIC7.64□□□□□ -1.19
MSX1P28360 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 AC024580.1-201ENST00000623020 674 ntBASIC7.64□□□□□ -1.19
MSX1P28360 LYG2-206ENST00000626374 650 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 AL139805.2-201ENST00000455305 2433 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AC132825.1-201ENST00000463573 2247 ntBASIC7.64□□□□□ -1.19
MSX1P28360 SLC8A1-203ENST00000403092 3178 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 OR8B9P-202ENST00000642028 5216 ntBASIC7.64□□□□□ -1.19
MSX1P28360 AHCYL2-208ENST00000474594 2047 ntTSL 2 BASIC7.64□□□□□ -1.19
MSX1P28360 MASP1-205ENST00000392472 3900 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 OR2A20P-201ENST00000479887 2913 ntBASIC7.64□□□□□ -1.19
MSX1P28360 CDKL5-209ENST00000635828 3823 ntTSL 5 BASIC7.64□□□□□ -1.19
MSX1P28360 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 ZEB2-205ENST00000419938 1755 ntTSL 2 BASIC7.64□□□□□ -1.19
MSX1P28360 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSX1P28360 FMO5-203ENST00000441068 1696 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 ZNF268-206ENST00000536899 3236 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 BDNF-204ENST00000395980 4030 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 AC024337.1-201ENST00000558860 1562 ntTSL 4 BASIC7.63□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms