Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EYA1-202ENST00000340726 4326 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 MXI1-204ENST00000369612 879 ntTSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 SSX9-201ENST00000376909 591 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 SNORA51.7-201ENST00000384171 134 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 MIR320B1-201ENST00000390209 79 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 BCRP8-201ENST00000412037 255 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 EEF1A1P27-201ENST00000429983 1135 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC013429.1-201ENST00000456604 422 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 CDC42P1-201ENST00000456658 548 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 RN7SL516P-201ENST00000496127 297 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 MRPL49P1-201ENST00000505951 535 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 FGB-207ENST00000509493 1164 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AP000435.1-201ENST00000528539 496 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC007834.2-201ENST00000536310 343 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC016152.1-201ENST00000548344 521 ntTSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 ZNF321P-202ENST00000550843 495 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 LRP1-AS-201ENST00000554476 325 ntTSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC090695.1-201ENST00000561269 1222 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AL132657.2-201ENST00000564417 358 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC007136.1-201ENST00000589141 199 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 EXOSC3P2-201ENST00000594464 497 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC090525.3-201ENST00000605601 189 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 TUSC7.1-201ENST00000610969 165 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AL121594.5-201ENST00000631724 573 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 RHOJ-201ENST00000316754 3302 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 GRIA2-201ENST00000264426 3445 ntAPPRIS ALT1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 HYKK-205ENST00000566332 1422 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 PTPN14-205ENST00000543945 3842 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AL034397.3-202ENST00000621933 1815 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AL357556.1-201ENST00000421884 1388 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 NSRP1-217ENST00000612959 2420 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 OR4C1P-202ENST00000641065 1569 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 TRIM16-212ENST00000578237 3206 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC130464.1-201ENST00000416201 1500 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC023818.2-201ENST00000623817 2304 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 ARNTL2-203ENST00000311001 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 Z93929.1-201ENST00000418200 1475 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 DEFB124-201ENST00000317676 216 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 RPL10P16-201ENST00000325000 645 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC017079.1-201ENST00000333650 415 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 CARD17-201ENST00000375707 466 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 RPL12P10-201ENST00000413498 498 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AL139415.1-201ENST00000424862 352 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AL353803.3-201ENST00000444641 335 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 NPM1P13-201ENST00000452663 865 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 RPL7P48-201ENST00000461513 746 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 ZBED3-AS1-203ENST00000504506 702 ntTSL 3 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC8.35□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms