Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 HTR2A-201ENST00000378688 4835 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 LCN1P2-201ENST00000372030 223 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 DHFRP2-201ENST00000414224 547 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC234771.3-201ENST00000454984 622 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 JPX-212ENST00000639185 9658 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 MAPK8-205ENST00000374182 5638 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC091305.2-201ENST00000624049 1576 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC020658.2-201ENST00000559030 4020 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 DYNC1I2P1-201ENST00000435916 1838 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AL359092.1-201ENST00000417156 265 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AL845552.1-201ENST00000556820 323 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC037479.1-201ENST00000558361 625 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AL031722.1-201ENST00000570247 220 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC024884.1-201ENST00000620583 399 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 TNFRSF9-204ENST00000615230 5970 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 KNOP1-201ENST00000219837 6432 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 RNU1-150P-201ENST00000362491 162 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 RBBP4P5-201ENST00000398583 1266 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 MTND6P12-201ENST00000428247 522 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AL391987.1-201ENST00000441025 200 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 RN7SL187P-201ENST00000495587 303 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 IGKV2-19-201ENST00000518132 283 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC022613.3-201ENST00000560740 1346 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 ZNF840P-201ENST00000504759 1996 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 GAPDHP51-201ENST00000426454 1000 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 GAPDHP33-201ENST00000443168 1013 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC073109.1-201ENST00000445066 978 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 RPS26P39-201ENST00000469206 341 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC063962.1-201ENST00000608199 521 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AL365181.4-201ENST00000609800 547 ntBASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
SYNE1Q8NF91 AL353753.1-201ENST00000612217 2320 ntTSL 2 BASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms