Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC091304.4-201ENST00000565703 620 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AC105036.1-201ENST00000566222 271 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX3P41225 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 AL034374.2-201ENST00000605281 548 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC6.19□□□□□ -1.42
SOX3P41225 AL445647.2-201ENST00000615170 130 ntBASIC6.19□□□□□ -1.42
SOX3P41225 OR1N1-202ENST00000619659 939 ntBASIC6.19□□□□□ -1.42
SOX3P41225 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SOX3P41225 AL035425.4-201ENST00000624509 1063 ntBASIC6.19□□□□□ -1.42
SOX3P41225 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.19□□□□□ -1.42
SOX3P41225 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.18□□□□□ -1.42
SOX3P41225 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
SOX3P41225 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 AC025809.2-201ENST00000625085 1802 ntBASIC6.18□□□□□ -1.42
SOX3P41225 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC6.18□□□□□ -1.42
SOX3P41225 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
SOX3P41225 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.18□□□□□ -1.42
SOX3P41225 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.18□□□□□ -1.42
SOX3P41225 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
SOX3P41225 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
SOX3P41225 RPL12P23-201ENST00000405880 490 ntBASIC6.18□□□□□ -1.42
SOX3P41225 MTND4LP17-201ENST00000414607 293 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AC013403.1-201ENST00000436954 263 ntBASIC6.18□□□□□ -1.42
SOX3P41225 NPM1P23-201ENST00000440193 849 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.18□□□□□ -1.42
SOX3P41225 CRYGGP-201ENST00000443337 145 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AL445991.1-201ENST00000450381 475 ntBASIC6.18□□□□□ -1.42
SOX3P41225 KF459542.1-201ENST00000450908 553 ntBASIC6.18□□□□□ -1.42
SOX3P41225 BLNK-209ENST00000495266 440 ntTSL 5 BASIC6.18□□□□□ -1.42
SOX3P41225 H3F3AP3-201ENST00000497682 407 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.18□□□□□ -1.42
SOX3P41225 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.18□□□□□ -1.42
SOX3P41225 BTG1P1-201ENST00000540396 508 ntBASIC6.18□□□□□ -1.42
SOX3P41225 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC6.18□□□□□ -1.42
SOX3P41225 ANP32BP1-202ENST00000568553 737 ntBASIC6.18□□□□□ -1.42
SOX3P41225 RN7SL199P-201ENST00000578752 281 ntBASIC6.18□□□□□ -1.42
SOX3P41225 RN7SL656P-201ENST00000579044 281 ntBASIC6.18□□□□□ -1.42
SOX3P41225 RN7SL404P-201ENST00000582421 281 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.18□□□□□ -1.42
SOX3P41225 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.18□□□□□ -1.42
SOX3P41225 AC091133.5-201ENST00000603088 301 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AC012175.1-201ENST00000603755 531 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AL359704.2-201ENST00000604335 521 ntBASIC6.18□□□□□ -1.42
SOX3P41225 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC6.18□□□□□ -1.42
SOX3P41225 AC091768.1-201ENST00000609258 930 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC6.18□□□□□ -1.42
SOX3P41225 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC6.18□□□□□ -1.42
SOX3P41225 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.18□□□□□ -1.42
SOX3P41225 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SOX3P41225 AL031123.3-201ENST00000623345 1837 ntBASIC6.18□□□□□ -1.42
SOX3P41225 AP002370.1-201ENST00000528055 1602 ntBASIC6.17□□□□□ -1.42
SOX3P41225 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 AL355377.1-201ENST00000621125 1653 ntBASIC6.17□□□□□ -1.42
SOX3P41225 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 AC079949.2-201ENST00000617117 2933 ntBASIC6.17□□□□□ -1.42
SOX3P41225 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.17□□□□□ -1.42
SOX3P41225 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 AL662795.2-201ENST00000624252 3706 ntBASIC6.17□□□□□ -1.42
SOX3P41225 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
SOX3P41225 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.17□□□□□ -1.42
SOX3P41225 OR7A2P-201ENST00000304105 930 ntBASIC6.17□□□□□ -1.42
SOX3P41225 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 RNA5SP140-201ENST00000364524 92 ntBASIC6.17□□□□□ -1.42
SOX3P41225 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC6.17□□□□□ -1.42
SOX3P41225 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 521.5 ms