Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC6.64□□□□□ -1.35
MSX2P35548 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.64□□□□□ -1.35
MSX2P35548 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 AC093278.2-201ENST00000564956 2485 ntBASIC6.64□□□□□ -1.35
MSX2P35548 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX2P35548 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
MSX2P35548 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
MSX2P35548 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 TTC9C-202ENST00000316461 1080 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX2P35548 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 RNA5SP472-201ENST00000363868 119 ntBASIC6.63□□□□□ -1.35
MSX2P35548 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
MSX2P35548 GAGE12E-201ENST00000381698 520 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 RNA5SP18-201ENST00000390935 121 ntBASIC6.63□□□□□ -1.35
MSX2P35548 CCR3-202ENST00000395940 1581 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 AC008937.2-201ENST00000415589 619 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 MARK2P12-201ENST00000420129 585 ntBASIC6.63□□□□□ -1.35
MSX2P35548 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX2P35548 TXNL1P1-201ENST00000429528 554 ntBASIC6.63□□□□□ -1.35
MSX2P35548 TRBV26OR9-2-201ENST00000432077 293 ntBASIC6.63□□□□□ -1.35
MSX2P35548 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX2P35548 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX2P35548 AL591719.1-201ENST00000444669 744 ntBASIC6.63□□□□□ -1.35
MSX2P35548 SDHCP3-201ENST00000445371 506 ntBASIC6.63□□□□□ -1.35
MSX2P35548 AC090954.1-201ENST00000445502 361 ntBASIC6.63□□□□□ -1.35
MSX2P35548 LYPD6B-207ENST00000450639 484 ntAPPRIS ALT2 TSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 SCDP1-201ENST00000455244 1081 ntBASIC6.63□□□□□ -1.35
MSX2P35548 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 AC007849.1-201ENST00000469794 513 ntTSL 4 BASIC6.63□□□□□ -1.35
MSX2P35548 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX2P35548 AC112219.1-201ENST00000491567 947 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX2P35548 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX2P35548 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX2P35548 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 AP003355.1-201ENST00000518956 587 ntBASIC6.63□□□□□ -1.35
MSX2P35548 IGLV10-67-201ENST00000519446 325 ntBASIC6.63□□□□□ -1.35
MSX2P35548 GLYATL1P4-201ENST00000529326 906 ntBASIC6.63□□□□□ -1.35
MSX2P35548 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX2P35548 OR7E2P-201ENST00000533071 889 ntBASIC6.63□□□□□ -1.35
MSX2P35548 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 AC243972.1-201ENST00000542992 570 ntTSL 4 BASIC6.63□□□□□ -1.35
MSX2P35548 AL135978.1-201ENST00000553618 1266 ntBASIC6.63□□□□□ -1.35
MSX2P35548 LINC02330-201ENST00000557784 555 ntTSL 4 BASIC6.63□□□□□ -1.35
MSX2P35548 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX2P35548 MIR4509-3-201ENST00000578671 94 ntBASIC6.63□□□□□ -1.35
MSX2P35548 RN7SL667P-201ENST00000582817 298 ntBASIC6.63□□□□□ -1.35
MSX2P35548 MIR4509-2-201ENST00000583920 94 ntBASIC6.63□□□□□ -1.35
MSX2P35548 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX2P35548 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 PCF11-AS1-201ENST00000602322 1516 ntBASIC6.63□□□□□ -1.35
MSX2P35548 AC139426.3-201ENST00000605648 2059 ntBASIC6.63□□□□□ -1.35
MSX2P35548 MED24-234ENST00000614384 454 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 MIR4509-1-201ENST00000618224 94 ntBASIC6.63□□□□□ -1.35
MSX2P35548 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
MSX2P35548 AL512506.2-201ENST00000624472 458 ntBASIC6.63□□□□□ -1.35
MSX2P35548 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX2P35548 AC017104.5-201ENST00000637647 639 ntBASIC6.63□□□□□ -1.35
MSX2P35548 AC132825.7-201ENST00000638744 335 ntBASIC6.63□□□□□ -1.35
MSX2P35548 AC119674.1-204ENST00000641348 1343 ntBASIC6.63□□□□□ -1.35
MSX2P35548 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX2P35548 AL033543.1-201ENST00000623440 13454 ntBASIC6.62□□□□□ -1.35
MSX2P35548 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
MSX2P35548 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX2P35548 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
MSX2P35548 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 AL049869.1-201ENST00000556933 1402 ntBASIC6.62□□□□□ -1.35
MSX2P35548 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms