Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC131935.1-201ENST00000524621 333 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 AP002004.1-206ENST00000532441 876 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC097467.4-201ENST00000605504 141 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 U91328.4-201ENST00000608919 517 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC017037.4-201ENST00000624526 826 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AL157831.2-201ENST00000564681 3095 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 FTO-215ENST00000636491 1676 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AC130360.2-201ENST00000533477 1556 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 RNU1-46P-201ENST00000384425 164 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 RNA5SP474-201ENST00000391234 90 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 RPL7AP23-201ENST00000482625 776 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 SCG5-207ENST00000497208 949 ntTSL 5 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AC010442.1-201ENST00000515583 816 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 SNRPCP6-201ENST00000528310 210 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AC091304.4-201ENST00000565703 620 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 MIR4312-201ENST00000579909 76 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 RN7SL32P-201ENST00000580514 281 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AC244100.4-201ENST00000617747 388 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AP001885.1-201ENST00000621658 558 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AC005332.9-201ENST00000620266 2921 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 AC007159.1-201ENST00000566529 4706 ntBASIC5.01□□□□□ -1.61
HLA-DMBP28068 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC5.01□□□□□ -1.61
HLA-DMBP28068 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
HLA-DMBP28068 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC5□□□□□ -1.61
HLA-DMBP28068 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HLA-DMBP28068 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5□□□□□ -1.61
HLA-DMBP28068 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5□□□□□ -1.61
HLA-DMBP28068 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5□□□□□ -1.61
HLA-DMBP28068 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
HLA-DMBP28068 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5□□□□□ -1.61
HLA-DMBP28068 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5□□□□□ -1.61
HLA-DMBP28068 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5□□□□□ -1.61
HLA-DMBP28068 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5□□□□□ -1.61
HLA-DMBP28068 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms