Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC30.26■■■□□ 2.44
COL17A1Q9UMD9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL17A1Q9UMD9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
COL17A1Q9UMD9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
COL17A1Q9UMD9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
COL17A1Q9UMD9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL17A1Q9UMD9 SPDYE13P-201ENST00000445314 798 ntBASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 AL671883.3-201ENST00000603274 991 ntBASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 AC092119.3-201ENST00000612618 583 ntBASIC30.25■■■□□ 2.43
COL17A1Q9UMD9 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 ZNF444P1-201ENST00000559497 298 ntBASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 CYGB-204ENST00000589342 815 ntTSL 3 BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL17A1Q9UMD9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 AC004870.1-201ENST00000315132 882 ntBASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 SNX5-210ENST00000481323 562 ntTSL 3 BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 AC111152.3-201ENST00000569699 673 ntBASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 AL031432.5-201ENST00000641059 760 ntBASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL17A1Q9UMD9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 KRT8P36-201ENST00000489121 1440 ntBASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC30.22■■■□□ 2.43
COL17A1Q9UMD9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 AC112907.2-201ENST00000448639 330 ntBASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 AC011298.2-201ENST00000617989 482 ntBASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL17A1Q9UMD9 YBX1P10-201ENST00000444752 975 ntBASIC30.2■■■□□ 2.43
COL17A1Q9UMD9 FAAHP1-202ENST00000446499 1238 ntBASIC30.2■■■□□ 2.43
COL17A1Q9UMD9 GXYLT1P6-201ENST00000456472 1187 ntBASIC30.2■■■□□ 2.43
COL17A1Q9UMD9 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC30.2■■■□□ 2.43
COL17A1Q9UMD9 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC30.2■■■□□ 2.43
COL17A1Q9UMD9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL17A1Q9UMD9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC30.2■■■□□ 2.43
COL17A1Q9UMD9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL17A1Q9UMD9 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.42
COL17A1Q9UMD9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
COL17A1Q9UMD9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
COL17A1Q9UMD9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
COL17A1Q9UMD9 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms