Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
ZNF541Q9H0D2 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 KRT18P16-201ENST00000510337 1294 ntBASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.92■■□□□ 1.42
ZNF541Q9H0D2 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 AC096733.2-201ENST00000609937 1394 ntBASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 AL359075.1-203ENST00000462729 1002 ntBASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 CLN6-214ENST00000636314 442 ntTSL 3 BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.91■■□□□ 1.42
ZNF541Q9H0D2 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 ANKRD20A18P-201ENST00000359341 492 ntBASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 YBX1P10-201ENST00000444752 975 ntBASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 CCR12P-201ENST00000446203 998 ntBASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 AC005332.1-201ENST00000577698 1310 ntBASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ZNF541Q9H0D2 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 AL671277.2-201ENST00000458060 996 ntBASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 AC012313.10-201ENST00000623509 926 ntBASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 KRT8P17-201ENST00000453110 1448 ntBASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.42
ZNF541Q9H0D2 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
ZNF541Q9H0D2 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
ZNF541Q9H0D2 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
ZNF541Q9H0D2 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
ZNF541Q9H0D2 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
ZNF541Q9H0D2 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 SLC25A1P2-201ENST00000430693 912 ntBASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 AC092338.2-201ENST00000568827 1415 ntBASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC23.88■■□□□ 1.41
ZNF541Q9H0D2 AC116407.4-201ENST00000623319 1061 ntBASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms