Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
IFT140Q96RY7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
IFT140Q96RY7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
IFT140Q96RY7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
IFT140Q96RY7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
IFT140Q96RY7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC33.18■■■□□ 2.9
IFT140Q96RY7 KLK8-205ENST00000593490 267 ntTSL 3 BASIC33.18■■■□□ 2.9
IFT140Q96RY7 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC33.18■■■□□ 2.9
IFT140Q96RY7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC33.17■■■□□ 2.9
IFT140Q96RY7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
IFT140Q96RY7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
IFT140Q96RY7 FXN-203ENST00000396366 922 ntTSL 2 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 TUBB8P6-201ENST00000436895 1288 ntBASIC33.17■■■□□ 2.9
IFT140Q96RY7 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
IFT140Q96RY7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC33.17■■■□□ 2.9
IFT140Q96RY7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
IFT140Q96RY7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
IFT140Q96RY7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC33.16■■■□□ 2.9
IFT140Q96RY7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
IFT140Q96RY7 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC33.16■■■□□ 2.9
IFT140Q96RY7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC33.16■■■□□ 2.9
IFT140Q96RY7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC33.16■■■□□ 2.9
IFT140Q96RY7 AL353719.1-201ENST00000566847 864 ntBASIC33.16■■■□□ 2.9
IFT140Q96RY7 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC33.16■■■□□ 2.9
IFT140Q96RY7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC33.16■■■□□ 2.9
IFT140Q96RY7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
IFT140Q96RY7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC33.16■■■□□ 2.9
IFT140Q96RY7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC33.16■■■□□ 2.9
IFT140Q96RY7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
IFT140Q96RY7 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
IFT140Q96RY7 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC33.15■■■□□ 2.9
IFT140Q96RY7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
IFT140Q96RY7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC33.15■■■□□ 2.9
IFT140Q96RY7 ZNF444P1-201ENST00000559497 298 ntBASIC33.15■■■□□ 2.9
IFT140Q96RY7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
IFT140Q96RY7 DFFB-212ENST00000625756 649 ntTSL 5 BASIC33.15■■■□□ 2.9
IFT140Q96RY7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC33.15■■■□□ 2.9
IFT140Q96RY7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
IFT140Q96RY7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC33.14■■■□□ 2.9
IFT140Q96RY7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
IFT140Q96RY7 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
IFT140Q96RY7 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
IFT140Q96RY7 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC33.14■■■□□ 2.9
IFT140Q96RY7 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC33.14■■■□□ 2.9
IFT140Q96RY7 RN7SL510P-201ENST00000581311 263 ntBASIC33.14■■■□□ 2.9
IFT140Q96RY7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC33.14■■■□□ 2.9
IFT140Q96RY7 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
IFT140Q96RY7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC33.14■■■□□ 2.9
IFT140Q96RY7 HYMAI.1-201ENST00000620949 238 ntBASIC33.14■■■□□ 2.9
IFT140Q96RY7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC33.14■■■□□ 2.9
IFT140Q96RY7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
IFT140Q96RY7 TFP1-202ENST00000475455 1573 ntBASIC33.14■■■□□ 2.9
IFT140Q96RY7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
IFT140Q96RY7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
IFT140Q96RY7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC33.14■■■□□ 2.9
IFT140Q96RY7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC33.14■■■□□ 2.9
IFT140Q96RY7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
IFT140Q96RY7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
IFT140Q96RY7 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC33.13■■■□□ 2.89
IFT140Q96RY7 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
IFT140Q96RY7 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC33.13■■■□□ 2.89
IFT140Q96RY7 CNP-204ENST00000472031 1019 ntTSL 2 BASIC33.13■■■□□ 2.89
IFT140Q96RY7 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC33.13■■■□□ 2.89
IFT140Q96RY7 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC33.13■■■□□ 2.89
IFT140Q96RY7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC33.13■■■□□ 2.89
IFT140Q96RY7 C1orf229-201ENST00000623686 2258 ntBASIC33.13■■■□□ 2.89
IFT140Q96RY7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
IFT140Q96RY7 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
IFT140Q96RY7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC33.12■■■□□ 2.89
IFT140Q96RY7 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC33.12■■■□□ 2.89
IFT140Q96RY7 AC112907.2-201ENST00000448639 330 ntBASIC33.12■■■□□ 2.89
IFT140Q96RY7 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC33.12■■■□□ 2.89
IFT140Q96RY7 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
IFT140Q96RY7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC33.12■■■□□ 2.89
IFT140Q96RY7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
IFT140Q96RY7 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
IFT140Q96RY7 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
IFT140Q96RY7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC33.12■■■□□ 2.89
IFT140Q96RY7 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
IFT140Q96RY7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC33.12■■■□□ 2.89
IFT140Q96RY7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC33.12■■■□□ 2.89
IFT140Q96RY7 AC004263.2-201ENST00000617183 678 ntBASIC33.12■■■□□ 2.89
IFT140Q96RY7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC33.11■■■□□ 2.89
IFT140Q96RY7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC33.11■■■□□ 2.89
IFT140Q96RY7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
IFT140Q96RY7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC33.11■■■□□ 2.89
IFT140Q96RY7 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
IFT140Q96RY7 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
IFT140Q96RY7 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
IFT140Q96RY7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC33.11■■■□□ 2.89
IFT140Q96RY7 KRT17P6-201ENST00000453795 1220 ntBASIC33.11■■■□□ 2.89
IFT140Q96RY7 Z85996.1-201ENST00000494644 937 ntBASIC33.11■■■□□ 2.89
IFT140Q96RY7 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC33.11■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms